Introduction

Poor reproducibility, the inability of reproducing, by using the original data, the original data analysis exactly, and replicability, the inability of reproducing, by new experiments, the original data approximately, have become major concerns in experimental biomedical science. So far reproducibility and replicability issues have been mostly addressed in different studies, making it difficult to prise apart their relative contributions to the quality of an experimental system in the wild {Iqbal:2016es}.

Determining the reproducibility of a study is relatively straightforward – one needs to ascertain that the original data analysis methods are described in sufficient detail and that the original data is obtainable in an analysable form.

Reproducibility of a study merely suggest that the data analysis of the original study was done, if not correctly, at least successfully by following the published plan. Reproducibility is a minimum requirement for soundness of a study, but does not guarantee it {Bollen:2015wf}.
Neither does a successful replication generate new evidence in favour or a scientific hypothesis {Goodman:2016bo}.

In contrast, a replication study generates new data by the original experimental procedures (although not necessarily the original data analytic methods). Replicability presupposes that we have access to a sufficiently detailed description of the experimental aspects of the study. Unlike a successful reproduction of a study, a successful replication introduces new evidence to science and thus essentially constitutes a form of meta-analysis, which has the potential to change the conclusions of the original study {Goodman:2016bo}. A successful replication is no guarantee for stability of conclusions – indeed, studies that give negative results individually can point to scientifically meaningful effects, when analysed together {Goodman:2016bo}. Moreover, even when presented with identical data there is room for reasonable disagreements about scientific conclusions among people with different interpretations of the scientific context of the problem {Maivali:2015wr}. There are two major hurdles in the replication business: the high cost of actually repeating experiments and a lack of consensus on how to measure replicability, which has led to the presentation of several potentially contradictory measures of replicability, even in the same paper (REF). This makes it desirable to first estimate in silico, which studies are worth replicating in the lab, and how to best replicate them.

To do this efficiently, we will concentrate on a single experimental system: differential expression profiling by RNA sequencing. RNA-seq has several advantages as a model system for studying experimental quality. It is currently a widely used and fast-growing system, suggesting that many new researchers adopt it every year 1. With a typical experiment costing in the range of … it consumes a great deal of public funding.

Nuleotide sequences and associated metadata is stored in three major public repositories – NCBI Sequence Read Archive (SRA), the European Bioinformatics Institute (EBI), and the DNA Database of Japan (DDBJ) that share data under International Nucleotide Sequence Database Collaboration (INSDC).

In contrast to INSDC, NCBI GEO functional genomics database also requires submission of a processed or summary data from which the conclusions in associated manuscripts are based. GEO arranges submission of the uploaded raw data files to SRA. Importantly, processed summary data allows the direct evaluation and reproduction of analysis.

RNA-seq is usually done in a massively parallel way, testing for differential expression between experiment and control conditions of thousands of RNA pairs. This allows to check the quality of each RNA-seq experiment by examining the distribution of the p values that were calculated by the original authors and were used by them to make inferences about differential expression of individual RNAs in their study (REF). Equally importantly, when these p values indicate a technically successful experiment, they can be further used to calculate the false discovery rate (FDR) and the stable retrospective power (SRP), which together enable to analyse the replication potential of the study (REF). This leads to a quality control procedure that works by sequential elimination and first discards the studies that do not describe their methods or deposit data, then the ones whose data (the p values) indicate serious problems with experimental design and/or data analysis, and finally the studies, whose low power suggests scientific irrelevance. Thus we aim to estimate the general quality of the RNA-seq field, determine the quality of individual studies, estimate the efficiency of potential replication studies, propose improvements in the design of these replication studies, and determine, which step of the RNA-seq process would have the greatest gains in terms of the overall health of the field, should improvements be targeted to it.

We believe that the health of a field of science can be best and cheapest gauged by a sequential elimination procedure: (1) estimating the fraction of reproducible publications in it, (2) actually reproducing its analyses, where possible, and checking for signs of failed experimental design and data analyses, (3) from the publications that by reproducibility criteria are worthy of replication attempts, estimating the statistical power of the experimental systems to provide reproducible results in replication studies, as well as the number of true effects left undiscovered in the original study that could be found in the replication study, (4) estimating the magnitude of changes to the experimental protocol (especially to sample size) that would allow high-powered replication studies.

Here we offer an integrated picture of the reproducibility and expected replicability of a modern and popular method of determining differential expression levels of RNAs, namely expression profiling by RNA sequencing.

We set out to assess following checklist for RNA-seq experiments submitted to Entrez GEO database.

  1. Reproducibility: is data usable for reanalysis? (deposition to a public database)
  2. Compliance with GEO database submission requirements?
  3. How many of the GEO submissions provide p value tables?
  4. P histograms – how many experiments are poorly designed/analysed?
  5. Replicability measures: SRP, nr of undiscovered effects, expected replication rate, required sample size for high power?

Materials and methods

Data query and import

Data was queried from NCBI GEO database by using eSearch E-Util with search string “expression profiling by high throughput sequencing[DataSet Type]” using entrezquery R package. GEO UIDs were extracted from query results with xml2 package v1.2.0 (Wickham, Hester, and Ooms 2018). UIDs were used to retrieve GEO document summaries using eSummary E-Util. Metadata was extracted from document summaries using xmlSApply function from XML package v3.98-1.17 (Temple Lang and CRAN Team 2019) and FTPLinks were used to identify supplemental files. We excluded from downloading supplemental files which contained pattern: ‘filelist’ ,‘annotation’ ,‘readme’ ,‘error’ in the file name and we also excluded files with following pattern ‘raw.tar’ ,‘csfasta’ ,‘bam’ ,‘sam’ ,‘bed’ ,‘[:punct:]hic’ ,‘hdf5’ ,‘bismark’ ,‘map’ ,‘barcode’ ,‘peaks’ ,‘tar’ ,‘gtf’ ,‘(big)?bed(.txt|12|graph|pk)?’ ,‘bw’ ,‘wig’ ,‘hic’ ,‘gct(x)?’ ,‘tdf’ ,‘gff(3)?’ ,‘pdf’ ,‘png’ ,‘zip’ ,‘sif’ ,‘narrowpeak’ ,‘fa(sta|stq)?’ ,‘r\(' ,'rda(ta)?\)’ in the file extension. Flat tables were imported into R using fread function from package data.table v1.12.0 (Dowle and Srinivasan 2019). MS Excel xls(x) files were imported using read_excel function from package readxl v1.2.0 (Wickham and Bryan 2018). Compressed xls(x) files were uncompressed before import using gzip. HT-seq experiment metadata was extracted from series matrix files. Supplementary files and series matrix files were downloaded using entrezquery package.

Data analysis

Exact binomial test was used to test differences in proportions. Proportion of true nulls was calculated using propTrueNull function from limma package v3.38.3 (???).

Code availability

Source code is available in github repo org/reponame.

Results

HT-sequencing expression data in GEO database

To assess the quality of high-throughput sequencing datasets we queried the NCBI GEO database for “expression profiling by high throughput sequencing”. Query retrieved 23250 datasets. GEO database shows exponentially growing number of HT-seq data set submissions between 2006 and 2017 (Fig. 1). First HT-seq data set was submitted to GEO database at 2006-09-08. We limited our query for datasets submitted up to the 2018-12-31 to reduce the number of recent incomplete submissions.

Approximately 69% of GEO data sets (16135) contain data from mouse or human origin (Fig. 1, left facet). The 87% (95%CI, 86.2% to 87.3%) of human and mouse data sets are linked to their primary publication. The proportion of datasets with publications is lower when other taxa are used as model organisms 79% (95%CI, 78.4% to 80.2%)(Fig. 1, right facet). As expected, the gap between published GEO series and published articles is bigger for more recent submissions.

For the human and mouse subset, we were able to identify supplementary files for 96% (22435) of GEO series.
The data sets lacking public supplementary files nevertheless show 86% publication rate (95%CI, 83.3% to 88.2%) which is similar to data sets with supplementary files.

Datasets submitted to NCBI GEO database featuring expression profiling by high-throughput sequencing. GEO series submission dynamics and associated publications of HT-seq data. Left facet, submissions featuring human or mouse data, N = 16135. Right facet, submissions of other taxa, N = 7115. Dashed line, GEO series with publications.

Figure 1: Datasets submitted to NCBI GEO database featuring expression profiling by high-throughput sequencing. GEO series submission dynamics and associated publications of HT-seq data. Left facet, submissions featuring human or mouse data, N = 16135. Right facet, submissions of other taxa, N = 7115. Dashed line, GEO series with publications.

Compliance with GEO database submission requirements and data usability for reanalysis

We sought to determine the compliance with the formal requirements for GEO data submission (https://www.ncbi.nlm.nih.gov/geo/info/seq.html). This pertains to the reproducibitly of data analysis. GEO archive has three required components: metadata, processed data, and raw data. Minimally these processed files are required to contain raw or normalized sequence read counts, or peak files of ChIP-Seq data. While, in the presence of raw data, supplementary data is not strictly neccessary for reproducibility, reproducing analysis from the raw data requires the reproduction of the full analysis, starting from re-aligning sequences to the genome, which can be practically unfeasible.

Supplementary HT-seq files uplodaded to NCBI GEO contain most commonly raw or processed sequence data files as a ‘RAW.tar’ archive and associated automatically generated ‘filelist.txt’ file (Fig. 2). ‘RAW.tar’ archive contains one file per sample and samples can be directly mapped to metadata by using sample name.

Filename extensions and common stubs of supplementary file names from HT-seq datasets submitted to NCBI GEO database. (A) File extensions of supplementary file names. (B) Common stubs of supplementary file names. Stubs were obtained by removing GEO id from supplementary file names and converting string to lower case. Stubs with N > 10 occurences are shown.

Figure 2: Filename extensions and common stubs of supplementary file names from HT-seq datasets submitted to NCBI GEO database. (A) File extensions of supplementary file names. (B) Common stubs of supplementary file names. Stubs were obtained by removing GEO id from supplementary file names and converting string to lower case. Stubs with N > 10 occurences are shown.

RAW.tar files are included in 53% (11889) of GEO series, whereas only RAW.tar and filelist.txt is present in 42% (9381) GEO series (Fig. 2 and 3).

Submission and publication of GEO series with only RAW.tar and filelist.txt supplementary files.

Figure 3: Submission and publication of GEO series with only RAW.tar and filelist.txt supplementary files.

Other common files contain annotations ‘readme.txt’ and processed data: commonly sequence read counts, gene expression analysis results or ChIP-Seq peak counts.

Sequence read counts can be either as raw read counts or normalised read counts. Gene expression analysis of HT-seq data is commonly performed by fitting models to discrete sequence read count data. Normalised sequence read counts are used for plotting and visual evaluation of the analysis results, but cannot be used to directly reproduce gene expression analysis.

However, tables containing top-ranked genes/features (toptables) from gene expression analysis with complete set of raw P values allow direct evaluation of the data and analysis quality underlying tested hypothesis.

Distribution of supplementary files per GEO Accession before and after filtering supplementary files for download. Left, all supplementary files. Right, supplementary files to be downloaded after filtering for tabular formats. Numbers show total number of files, respectively, before and after filtering.

Figure 4: Distribution of supplementary files per GEO Accession before and after filtering supplementary files for download. Left, all supplementary files. Right, supplementary files to be downloaded after filtering for tabular formats. Numbers show total number of files, respectively, before and after filtering.

GEO datasets contain most commonly one to two supplementary files per Accession and up to 269 files per Accession (Fig. 4). To reduce number of files to be downloaded from GEO database, based on file extensions and filenames, we excluded from the dataset files that most plausibly don’t contain final processed data in a tabular format, such as binary files, annotations, raw data, graphics, and other non tabular files. This filter reduced the number of files by 57% (Fig. 4) and GEO series by 47%. Resulting dataset consisted of 24109 files from 11930 GEO series to be downloaded.

Retention of HT-seq GEO series and supplementary files in filter for full sets of p values. Arrows from left to right, (1) GEO sets with supplementary files, (2) filter out RAW.tar and filelist.txt files from supplementary file names, (3) supplementary files with flat table formats that were downloaded, (4) tables with p values. Number of p value sets is the number of sets with >1000 features.

Figure 5: Retention of HT-seq GEO series and supplementary files in filter for full sets of p values. Arrows from left to right, (1) GEO sets with supplementary files, (2) filter out RAW.tar and filelist.txt files from supplementary file names, (3) supplementary files with flat table formats that were downloaded, (4) tables with p values. Number of p value sets is the number of sets with >1000 features.

Processed data

Global view on number of samples and features of HT-seq experiments. (A) Number of features in GEO series where supplementary file with p values was uploaded (dark grey) compared to all GEO series with supplementary files (light grey). (B) Number of samples in GEO series where p values were available (dark grey) compared to all series with supplementary files (light grey). (C) Mean number of samples was 33 and median 8. Most frequent sample size was 6. Mean number of features was 61832 and median 22336. Number of samples was taken from series matrix files and number of features is number of rows in supplementary files. Dashed line denotes cutoff for complete sets of features/p values.

Figure 6: Global view on number of samples and features of HT-seq experiments. (A) Number of features in GEO series where supplementary file with p values was uploaded (dark grey) compared to all GEO series with supplementary files (light grey). (B) Number of samples in GEO series where p values were available (dark grey) compared to all series with supplementary files (light grey). (C) Mean number of samples was 33 and median 8. Most frequent sample size was 6. Mean number of features was 61832 and median 22336. Number of samples was taken from series matrix files and number of features is number of rows in supplementary files. Dashed line denotes cutoff for complete sets of features/p values.

Proportion of true null hypotheses in P value sets. (A) Distribution of estimated \(\pi0\) values in reported GEO HT-seq P value sets. (B) Distribution of \(\pi0\) versus number of features. Blue line, loess fit. P value sets with >1000 features are shown.

Figure 7: Proportion of true null hypotheses in P value sets. (A) Distribution of estimated \(\pi0\) values in reported GEO HT-seq P value sets. (B) Distribution of \(\pi0\) versus number of features. Blue line, loess fit. P value sets with >1000 features are shown.

Journals publishing HT-seq data. (A) Top 20 journals publishing non-human or -mouse datasets. (B) Top 20 journals publishing human or mouse datasets. (C) Top 10 journals publishing articles reporting P values in GEO supplementary files.

Figure 8: Journals publishing HT-seq data. (A) Top 20 journals publishing non-human or -mouse datasets. (B) Top 20 journals publishing human or mouse datasets. (C) Top 10 journals publishing articles reporting P values in GEO supplementary files.

Citation of articles featuring HT-seq data. (A) Distribution of the number of citations in P value sets displaying anti-conservative histogram compared to other histogram types. (B) Relationship between the proportion of true nulls and number of citations. Blue line, linear model fit. Citation data is from Scopus database.

Figure 9: Citation of articles featuring HT-seq data. (A) Distribution of the number of citations in P value sets displaying anti-conservative histogram compared to other histogram types. (B) Relationship between the proportion of true nulls and number of citations. Blue line, linear model fit. Citation data is from Scopus database.

Phylogenetic tree of P value histograms. Tree was obtained by clustering of the empirical cumulative distribution function outputs of P value histograms. Colors show groups obtained by cutting the tree at the height giving six clusters.

Figure 10: Phylogenetic tree of P value histograms. Tree was obtained by clustering of the empirical cumulative distribution function outputs of P value histograms. Colors show groups obtained by cutting the tree at the height giving six clusters.

Sample size in HT-seq GEO series. Experimental groups were inferred from GEO series matrix files and mean samples size was calculated from experimental group sizes.

Figure 11: Sample size in HT-seq GEO series. Experimental groups were inferred from GEO series matrix files and mean samples size was calculated from experimental group sizes.

Proportion of true nulls versus sample size. Proportion of true nulls was calculated for anti-conservative P value sets.

Figure 12: Proportion of true nulls versus sample size. Proportion of true nulls was calculated for anti-conservative P value sets.

Table 1: Summary of histogram types in supplementary files of GEO HT-seq submissions.
Type n %
anti-conservative 563 24.7%
bimodal 433 19.0%
conservative 1036 45.4%
other 118 5.2%
spiky 97 4.3%
uniform 33 1.4%
Table 2: Histogram types after filtering out non-informative features (N = 493).
Type Raw % Basemean filtered %
anti-conservative 54.0% 81.3%
bimodal 8.5% 0.4%
conservative 12.6% 0.2%
other 9.5% 14.0%
spiky 12.0% 1.0%
uniform 3.4% 3.0%
Table 3: Proportion of histograms that could be fixed by filtering out non-informative features.
Type conversion n %
improvement 138 28.0%
no improvement 56 11.4%
same bad 33 6.7%
same good 263 53.3%
worse 3 0.6%
Table 4: P value histograms and proportion of true nulls. Histograms are colored according to clustering oftheir empirical cumulative distribution function outputs. Supplementary file names for tables from xls(x) files might be appended with sheet name. This table contains 2280 unique P value histograms from 1181 GEO Accessions. pi0 was calculated using limma::propTrueNull() function.
Accession Supplementary file name (with p-value set id) Histogram Type QCType pi0 Histogram after filter Type after filter pi0 after filter Annot Organism Taxid Organism2 Taxid2
GSE100245 GSE100245_gene_exp-proc.diff.txt.gz anti-conservative other 0.57 NA NA NA GPL23608 Ramichloridium luteum 508918 NA NA
GSE100355 GSE100355_Diff_mcPC_VSMC.txt.gz anti-conservative anti-conservative 0.26 anti-conservative 0.11 GPL20084 Rattus norvegicus 10116 NA NA
GSE100414 GSE100414_DN345_KK43_DESeq2.txt.gz anti-conservative anti-conservative 0.56 anti-conservative 0.32 GPL23619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 588858 NA NA
GSE100578 GSE100578_jmjc_vs_WT.txt.gz anti-conservative other 0.70 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE100578 GSE100578_A512P_vs_WT.txt.gz anti-conservative other 0.78 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE100990 GSE100990_RNA_Seq_Nr4a1_CDKO_HSC_DESeq2_output.txt.gz anti-conservative anti-conservative 0.41 anti-conservative 0.22 GPL13112 Mus musculus 10090 NA NA
GSE101142 GSE101142_Supplemental_table_1.txt.gz-set-0 anti-conservative anti-conservative 0.54 anti-conservative 0.45 GPL23692 Zobellia galactanivorans 63186 NA NA
GSE101142 GSE101142_Supplemental_table_1.txt.gz-set-1 anti-conservative anti-conservative 0.58 anti-conservative 0.50 GPL23692 Zobellia galactanivorans 63186 NA NA
GSE101142 GSE101142_Supplemental_table_1.txt.gz-set-2 anti-conservative anti-conservative 0.48 anti-conservative 0.28 GPL23692 Zobellia galactanivorans 63186 NA NA
GSE101157 GSE101157_LargeRNA.shL1.100hrs.293T.xlsx.gz anti-conservative other 0.56 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE101167 GSE101167_LargeRNA.siL3-IDT_Dharmacon.48hrs.HeyA8.xlsx.gz-set-0 anti-conservative other 0.54 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE101167 GSE101167_LargeRNA.siL3-IDT_Dharmacon.48hrs.HeyA8.xlsx.gz-set-1 anti-conservative other 0.58 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-0 anti-conservative other 0.77 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-1 anti-conservative other 0.76 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE101342 GSE101342_All_Genes_LincDUSP_V481_cells_DESeq2.csv.gz anti-conservative anti-conservative 0.46 anti-conservative 0.20 GPL16791 Homo sapiens 9606 NA NA
GSE101342 GSE101342_All_Genes_LincDUSP_V703_cells_DESeq2.csv.gz anti-conservative anti-conservative 0.60 anti-conservative 0.37 GPL16791 Homo sapiens 9606 NA NA
GSE101480 GSE101480_Group370_vs_GroupCtrl.all.gene.result.txt.gz anti-conservative anti-conservative 0.43 NA NA NA GPL15433 Homo sapiens 9606 NA NA
GSE101596 GSE101596_S14203_genesdiff_wo5.xlsx anti-conservative other 0.51 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE101898 GSE101898_Galaxy122-CellXtype_QKO_vs_QT7.tabular.txt.gz anti-conservative other 0.84 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE101939 GSE101939_WT_E16_H2ZKO_E16.anno.txt.gz anti-conservative other 0.82 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE101996 GSE101996_bfx319.2month.table1.csv.gz anti-conservative anti-conservative 0.90 anti-conservative 0.82 GPL17021 Mus musculus 10090 NA NA
GSE102060 GSE102060_BPA_vs_Control.txt.gz anti-conservative other 0.72 NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE102300 GSE102300_diffexpr-results.csv.gz anti-conservative anti-conservative 0.66 anti-conservative 0.35 GPL22765 Caenorhabditis elegans 6239 NA NA
GSE102369 GSE102369_deseq_differential_expression_results.txt.gz anti-conservative other 0.69 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE102474 GSE102474_RNA_DESeq2.tsv.gz anti-conservative other 0.77 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE102474 GSE102474_RNA_DESeq2.tsv.gz anti-conservative other 0.77 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-2 anti-conservative other 0.53 NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-3 anti-conservative other 0.54 NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE102546 GSE102546_deseq2.results.csv.gz anti-conservative other 0.88 NA NA NA GPL20084 Rattus norvegicus 10116 NA NA
GSE102595 GSE102595_SupplementalTable_Expression_and_SplicingChanges.xlsx-sheet-Splicing_allDEXseq3rep3cond anti-conservative other 0.96 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE102793 GSE102793_deseq2_genes.tsv.gz anti-conservative anti-conservative 0.55 anti-conservative 0.36 GPL14875 Danio rerio 7955 NA NA
GSE102842 GSE102842_Input_gfp-La_WT_vs_RNA_IP_gfp-La_WT.txt.gz anti-conservative anti-conservative 0.67 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE102872 GSE102872_DESeq_12h_vs_0h.csv.gz anti-conservative anti-conservative 0.88 anti-conservative 0.83 GPL23937 Trichophyton rubrum 5551 NA NA
GSE102872 GSE102872_DESeq_12h_vs_3h.csv.gz anti-conservative anti-conservative 0.90 anti-conservative 0.82 GPL23937 Trichophyton rubrum 5551 NA NA
GSE102872 GSE102872_DESeq_3h_vs_0h.csv.gz anti-conservative anti-conservative 0.85 anti-conservative 0.78 GPL23937 Trichophyton rubrum 5551 NA NA
GSE103400 GSE103400_HNC3-vs+.txt.gz anti-conservative other 0.84 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE103405 GSE103405_Table_S1.xlsx anti-conservative anti-conservative 0.51 anti-conservative 0.47 GPL18573 Homo sapiens 9606 NA NA
GSE103415 GSE103415_DESeq2_genes_diffexp_by_fc_wildtype_vs_knockout.xls.gz anti-conservative anti-conservative 0.42 anti-conservative 0.36 GPL18133 Escherichia coli 562 NA NA
GSE103537 GSE103537_CD4low_GSE71645_diff.txt.gz anti-conservative anti-conservative 0.33 anti-conservative 0.14 GPL20795 Homo sapiens 9606 NA NA
GSE103868 GSE103868_DESeq2_Results_01_MockTransfected_Vs_Untransfected.txt.gz anti-conservative anti-conservative 0.55 anti-conservative 0.18 GPL20301 Homo sapiens 9606 NA NA
GSE104049 GSE104049_DESeq2.GMC3hvsNB3h.xlsx anti-conservative other 0.80 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE104049 GSE104049_DESeq2.GMC3hvsNB3h.xlsx anti-conservative other 0.80 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE104049 GSE104049_DESeq2.GMC5hvsNB5h.xlsx anti-conservative other 0.73 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE104049 GSE104049_DESeq2.GMC5hvsNB5h.xlsx anti-conservative other 0.73 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE104049 GSE104049_DESeq2.GMC90mvsNB90m.xlsx anti-conservative other 0.79 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE104049 GSE104049_DESeq2.GMC90mvsNB90m.xlsx anti-conservative other 0.79 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE104065 GSE104065_NSCs_E12KOvsWt_DESeq.txt.gz anti-conservative anti-conservative 0.90 anti-conservative 0.89 GPL21103 Mus musculus 10090 NA NA
GSE104415 GSE104415_processed.csv.gz anti-conservative anti-conservative 0.53 anti-conservative 0.39 GPL19057 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_differentiaton_day_0_to_1_transition.diff.gz anti-conservative anti-conservative 0.86 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_differentiaton_day_1_to_2_transition.diff.gz anti-conservative other 0.99 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_proliferation_vs_day_1_differentiation.diff.gz anti-conservative anti-conservative 0.89 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_proliferation_vs_day_2_differentiation.diff.gz anti-conservative anti-conservative 0.68 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_proliferation_vs_day_3_differentiation.diff.gz anti-conservative anti-conservative 0.65 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_proliferation_vs_day_4_differentiation.diff.gz anti-conservative anti-conservative 0.60 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_differentiation_day_0_to_1_transition.diff.gz anti-conservative other 0.93 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_differentiation_day_1_to_2_transition.diff.gz anti-conservative other 0.99 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_proliferation_vs_day_1_differentiation.diff.gz anti-conservative other 0.94 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_proliferation_vs_day_2_differentiation.diff.gz anti-conservative anti-conservative 0.77 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_proliferation_vs_day_3_differentiation.diff.gz anti-conservative anti-conservative 0.64 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_proliferation_vs_day_4_differentiation.diff.gz anti-conservative anti-conservative 0.62 NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs ATH (sortUP) anti-conservative other 0.79 NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs ATH (sortUP) anti-conservative other 0.79 NA NA NA GPL24077 Verticillium dahliae 27337 NA NA
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs ATH (sortDOWN) anti-conservative other 0.79 NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs ATH (sortDOWN) anti-conservative other 0.79 NA NA NA GPL24077 Verticillium dahliae 27337 NA NA
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs VDA (sortDOWN) anti-conservative anti-conservative 0.52 anti-conservative 0.39 GPL13222 Arabidopsis thaliana 3702 NA NA
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs VDA (sortDOWN) anti-conservative anti-conservative 0.52 anti-conservative 0.39 GPL24077 Verticillium dahliae 27337 NA NA
GSE104604 GSE104604_EIF5A_RNA-seq_genes.xls.gz anti-conservative anti-conservative 0.69 anti-conservative 0.52 GPL18573 Homo sapiens 9606 NA NA
GSE105064 GSE105064_Treat_vs_control_diff.txt.gz anti-conservative other 0.94 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE106371 GSE106371_SupplementalTableS1_counts.txt.gz anti-conservative anti-conservative 0.65 anti-conservative 0.32 GPL18413 Danio rerio 7955 NA NA
GSE106545 GSE106545_U251_WT_VS_AXLKO_FPKM.xlsx anti-conservative anti-conservative 0.47 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE106568 GSE106568_WT_vs_ibm1.txt.gz anti-conservative anti-conservative 0.88 NA NA NA GPL21179 Arabidopsis thaliana 3702 NA NA
GSE106568 GSE106568_WT_vs_ibm1.txt.gz anti-conservative anti-conservative 0.88 NA NA NA GPL24025 Arabidopsis thaliana 3702 NA NA
GSE106693 GSE106693_Control_v_zfp-1-1RNAi.xlsx anti-conservative anti-conservative 0.94 NA NA NA GPL24248 Schistosoma mansoni 6183 NA NA
GSE106860 GSE106860_processed_data.txt.gz anti-conservative anti-conservative 0.21 NA NA NA GPL24264 Microlunatus phosphovorus 29405 NA NA
GSE106985 GSE106985_Table_s1.xls.gz-sheet-D5.5MUT_D5.5WT.anno anti-conservative anti-conservative 0.05 NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE106985 GSE106985_Table_s1.xls.gz-sheet-D7.5MUT_D5.5MUT.anno anti-conservative anti-conservative 0.05 NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE106985 GSE106985_Table_s1.xls.gz-sheet-D7.5WT_D5.5WT.anno anti-conservative anti-conservative 0.06 NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE106985 GSE106985_Table_s1.xls.gz-sheet-D7.5MUT_D7.5WT.anno anti-conservative anti-conservative 0.04 NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE107052 GSE107052_processed_statistics_etc.txt.gz-set-0 anti-conservative anti-conservative 0.66 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107052 GSE107052_processed_statistics_etc.txt.gz-set-1 anti-conservative other 0.92 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107199 GSE107199_polyIC_vs._WT_ctrl_all.xlsx.gz-set-0 anti-conservative other 0.82 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE107207 GSE107207_res.genes.hampshire.c-d.csv.gz anti-conservative anti-conservative 0.61 anti-conservative 0.55 GPL21186 Sus scrofa 9823 NA NA
GSE107207 GSE107207_res.genes.pietrain.a-b.csv.gz anti-conservative anti-conservative 0.92 NA NA NA GPL21186 Sus scrofa 9823 NA NA
GSE107419 GSE107419_DEG_N_vs_ESC_DEseq.xlsx anti-conservative anti-conservative 0.24 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE107419 GSE107419_DEG_P_vs_N_DEseq.xlsx anti-conservative other 0.55 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE107419 GSE107419_DEG_Prl_vs_N_DEseq.xlsx anti-conservative anti-conservative 0.52 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE107419 GSE107419_DEG_Prl_vs_P_DEseq.xlsx anti-conservative other 0.58 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE107498 GSE107498_Supplementary_FIle_1_Sleuth_results.xlsx.gz-sheet-Sleuth Results anti-conservative anti-conservative 0.52 NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE107555 GSE107555_HL60_deseq_norm_countFeatures.txt.gz anti-conservative anti-conservative 0.78 anti-conservative 0.64 GPL18460 Homo sapiens 9606 NA NA
GSE107671 GSE107671_abundance.xlsx-set-1 anti-conservative anti-conservative 0.89 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE107671 GSE107671_abundance.xlsx-set-1 anti-conservative anti-conservative 0.89 NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE108106 GSE108106_DE_results_starved_vs_fed.txt.gz anti-conservative anti-conservative 0.77 anti-conservative 0.54 GPL17021 Mus musculus 10090 NA NA
GSE108157 GSE108157_huHrt_ICM.v.NICM_diffexp.xlsx anti-conservative other 0.98 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE108435 GSE108435_gut_vs_liver.txt.gz anti-conservative anti-conservative 0.64 anti-conservative 0.09 GPL14875 Danio rerio 7955 NA NA
GSE108438 GSE108438_BPTFKO_vs_WT_result_filtered_list.csv.gz anti-conservative other 0.97 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE108438 GSE108438_BPTFKO_vs_WT_result_filtered_list.csv.gz anti-conservative other 0.97 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE108732 GSE108732_DEseq2-F.xlsx-sheet-DEseq2 output anti-conservative anti-conservative 0.86 anti-conservative 0.68 GPL24463 Mesorhizobium ciceri biovar biserrulae WSM1271 765698 NA NA
GSE108732 GSE108732_DEseq2-NF.csv.gz anti-conservative anti-conservative 0.85 NA NA NA GPL24463 Mesorhizobium ciceri biovar biserrulae WSM1271 765698 NA NA
GSE108749 GSE108749_DMSO-vs-129_results.csv.gz anti-conservative other 0.79 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE108898 GSE108898_deseq2_analysis_cml39_vs_wt.txt.gz anti-conservative anti-conservative 0.75 anti-conservative 0.50 GPL17639 Arabidopsis thaliana 3702 NA NA
GSE109006 GSE109006_AM_Gore_Oct2016_RNAseq.txt.gz anti-conservative other 0.82 NA NA NA GPL24492 Astyanax mexicanus 7994 NA NA
GSE109152 GSE109152_All.HFD_v_ND.2_counts.txt.gz anti-conservative anti-conservative 0.92 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE109177 GSE109177_Ctrl_Untr_vs_Ctrl_PR20-ExpDiff_k562_.csv.gz anti-conservative anti-conservative 0.55 anti-conservative 0.27 GPL21626 Mus musculus 10090 NA NA
GSE109177 GSE109177_Ctrl_Untr_vs_Ctrl_PR20-ExpDiff_k562_.csv.gz anti-conservative anti-conservative 0.55 anti-conservative 0.27 GPL21697 Homo sapiens 9606 NA NA
GSE109177 GSE109177_SafePR50_vs_TMX2PR50-ExpDiff_neurons_.csv.gz anti-conservative other 0.78 NA NA NA GPL21626 Mus musculus 10090 NA NA
GSE109177 GSE109177_SafePR50_vs_TMX2PR50-ExpDiff_neurons_.csv.gz anti-conservative other 0.78 NA NA NA GPL21697 Homo sapiens 9606 NA NA
GSE109279 GSE109279_DESeq2.DiffExp_WT_SIRT3KO_MEFs.txt.gz anti-conservative anti-conservative 0.51 anti-conservative 0.19 GPL19057 Mus musculus 10090 NA NA
GSE109582 GSE109582_DESeq_results.csv.gz anti-conservative anti-conservative 0.28 anti-conservative 0.15 GPL21548 Cryptococcus neoformans var. grubii H99 235443 NA NA
GSE109615 GSE109615_gene_description.txt.gz-set-0 anti-conservative other 0.74 NA NA NA GPL24537 Cucumis sativus 3659 NA NA
GSE109615 GSE109615_gene_description.txt.gz-set-1 anti-conservative other 0.71 NA NA NA GPL24537 Cucumis sativus 3659 NA NA
GSE109615 GSE109615_gene_description.txt.gz-set-3 anti-conservative other 0.75 NA NA NA GPL24537 Cucumis sativus 3659 NA NA
GSE109844 GSE109844_CD4lowHLA-G_vs_human_N_CD4_diff.xls.gz anti-conservative other 0.86 NA NA NA GPL20795 Homo sapiens 9606 NA NA
GSE109844 GSE109844_CD4lowHLA-G_vs_human_N_CD4_diff.xls.gz anti-conservative other 0.86 NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-0 anti-conservative anti-conservative 0.60 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-1 anti-conservative anti-conservative 0.68 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-2 anti-conservative anti-conservative 0.51 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-3 anti-conservative anti-conservative 0.64 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-4 anti-conservative anti-conservative 0.34 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-5 anti-conservative anti-conservative 0.43 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-6 anti-conservative anti-conservative 0.85 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-7 anti-conservative anti-conservative 0.50 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-8 anti-conservative anti-conservative 0.51 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-9 anti-conservative anti-conservative 0.32 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE110445 GSE110445_rpoN_RNA_seq_analyzed.txt.gz anti-conservative anti-conservative 0.89 NA NA NA GPL19430 Pseudomonas aeruginosa PAO1 208964 NA NA
GSE110512 GSE110512_gene_exp.txt.gz anti-conservative anti-conservative 0.71 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE110646 GSE110646_Cuffdiff_gene_expression_March2016_reformat.csv.gz anti-conservative other 0.88 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE111012 GSE111012_450_vs_Phi11.txt.gz anti-conservative anti-conservative 0.78 anti-conservative 0.82 GPL17452 Staphylococcus aureus 1280 NA NA
GSE111012 GSE111012_450_vs_Phi80.txt.gz anti-conservative anti-conservative 0.67 anti-conservative 0.70 GPL17452 Staphylococcus aureus 1280 NA NA
GSE111126 GSE111126_Mutt110_vs_Wt.txt.gz anti-conservative other 0.66 NA NA NA GPL24333 Streptomyces coelicolor 1902 NA NA
GSE111126 GSE111126_Mutt110_vs_Wtcu.txt.gz anti-conservative other 0.62 NA NA NA GPL24333 Streptomyces coelicolor 1902 NA NA
GSE111126 GSE111126_Wtcu_vs_Wt.txt.gz anti-conservative other 0.75 NA NA NA GPL24333 Streptomyces coelicolor 1902 NA NA
GSE111189 GSE111189_diff-Deseq2-R-Oil-vs-85-Oil.txt.gz anti-conservative anti-conservative 0.57 anti-conservative 0.41 GPL19057 Mus musculus 10090 NA NA
GSE111227 GSE111227_TruSeq.DESeq2_results.txt.gz anti-conservative other 0.87 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE111305 GSE111305_SGI_vs_Control.DESeq2_Results.xlsx-sheet-SGI_vs_Control.DESeq2_Results anti-conservative other 0.99 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE111379 GSE111379_3chemos.80hrs.HeyA8.xlsx-sheet-All chemo samples.csv-set-0 anti-conservative other 0.64 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE111379 GSE111379_3chemos.80hrs.HeyA8.xlsx-sheet-All chemo samples.csv-set-1 anti-conservative other 0.52 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE111379 GSE111379_3chemos.80hrs.HeyA8.xlsx-sheet-All chemo samples.csv-set-2 anti-conservative other 0.64 NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE111538 GSE111538_Adipo_Yes_vs_Adipo_No.DESeq2_Results.xlsx.gz anti-conservative other 0.99 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE111666 GSE111666_E12_RNASEQ_HET_v_MUT.txt.gz anti-conservative other 1.00 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE111666 GSE111666_E12_RNASEQ_MUT_v_KI.txt.gz anti-conservative other 0.90 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S2_Ccl19hi_TRC_Ccl19lo_TRC_Cxcl9_TRC.xlsx-sheet-Ccl19hi TRC anti-conservative anti-conservative 0.39 anti-conservative 0.16 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S2_Ccl19hi_TRC_Ccl19lo_TRC_Cxcl9_TRC.xlsx-sheet-Ccl19lo TRC anti-conservative anti-conservative 0.72 anti-conservative 0.45 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S2_Ccl19hi_TRC_Ccl19lo_TRC_Cxcl9_TRC.xlsx-sheet-Cxcl9+ TRC anti-conservative anti-conservative 0.72 anti-conservative 0.51 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S3_MRC.xlsx anti-conservative anti-conservative 0.65 anti-conservative 0.34 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S4_PvC.xlsx anti-conservative anti-conservative 0.68 anti-conservative 0.30 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S5_CD34+_SC.xlsx anti-conservative anti-conservative 0.59 anti-conservative 0.30 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S6_Inmt+_SC.xlsx anti-conservative anti-conservative 0.59 anti-conservative 0.34 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S7_Nr4a1+_SC.xlsx-sheet-Nr4a1+ SC anti-conservative anti-conservative 0.52 anti-conservative 0.22 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S7_Nr4a1+_SC.xlsx-sheet-Nr4a1+ Inmt+ SC anti-conservative anti-conservative 0.61 anti-conservative 0.27 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S7_Nr4a1+_SC.xlsx-sheet-Nr4a1+ TRC anti-conservative anti-conservative 0.62 anti-conservative 0.31 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S7_Nr4a1+_SC.xlsx-sheet-Nr4a1+ CD34+ SC anti-conservative anti-conservative 0.82 anti-conservative 0.49 GPL21103 Mus musculus 10090 NA NA
GSE112903 GSE112903_Table_S8_FDC.xlsx anti-conservative anti-conservative 0.64 anti-conservative 0.34 GPL21103 Mus musculus 10090 NA NA
GSE113053 GSE113053_deseq.HSC.bfx338.xls.gz-sheet-all_genes anti-conservative other 0.76 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE113053 GSE113053_deseq.MPP.bfx312.xls.gz-sheet-all_genes anti-conservative other 0.84 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE113231 GSE113231_pde_expression_data_112413.txt.gz anti-conservative anti-conservative 0.93 NA NA NA GPL23152 Streptococcus pneumoniae 1313 NA NA
GSE113333 GSE113333_Typhi_gene_exp.diff.gz anti-conservative anti-conservative 0.50 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE113333 GSE113333_Typhi_gene_exp.diff.gz anti-conservative anti-conservative 0.50 NA NA NA GPL24906 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 209261 NA NA
GSE113333 GSE113333_Typhi_gene_exp.diff.gz anti-conservative anti-conservative 0.50 NA NA NA GPL24907 Homo sapiens 9606 NA NA
GSE113404 GSE113404_DESeq2_results_Mat1_OE_wt.xlsx anti-conservative anti-conservative 0.93 anti-conservative 0.73 GPL18295 Aspergillus fumigatus 746128 NA NA
GSE113404 GSE113404_DESeq2_results_Mat2_OE_wt.xlsx anti-conservative anti-conservative 0.62 anti-conservative 0.58 GPL18295 Aspergillus fumigatus 746128 NA NA
GSE113519 GSE113519_condition.DESeq2_results_allgenes.csv.gz anti-conservative anti-conservative 0.52 anti-conservative 0.13 GPL20301 Homo sapiens 9606 NA NA
GSE113683 GSE113683_DESeq2_res_Ax35_10x_vs._WT.csv.gz anti-conservative anti-conservative 0.84 anti-conservative 0.72 GPL17879 Mycobacterium tuberculosis 1773 NA NA
GSE113683 GSE113683_DESeq2_res_Ax35_30x_vs._WT.csv.gz anti-conservative anti-conservative 0.74 anti-conservative 0.63 GPL17879 Mycobacterium tuberculosis 1773 NA NA
GSE113716 GSE113716_DESeq2_results_t05_vs_t0.txt.gz anti-conservative anti-conservative 0.41 anti-conservative 0.37 GPL24749 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t05_vs_t0.txt.gz anti-conservative anti-conservative 0.41 anti-conservative 0.37 GPL24939 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t15_vs_t0.txt.gz anti-conservative anti-conservative 0.33 anti-conservative 0.29 GPL24749 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t15_vs_t0.txt.gz anti-conservative anti-conservative 0.33 anti-conservative 0.29 GPL24939 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t1_vs_t0.txt.gz anti-conservative anti-conservative 0.40 anti-conservative 0.36 GPL24749 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t1_vs_t0.txt.gz anti-conservative anti-conservative 0.40 anti-conservative 0.36 GPL24939 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t2_vs_t0.txt.gz anti-conservative anti-conservative 0.33 anti-conservative 0.30 GPL24749 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t2_vs_t0.txt.gz anti-conservative anti-conservative 0.33 anti-conservative 0.30 GPL24939 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t4_vs_t0.txt.gz anti-conservative anti-conservative 0.30 anti-conservative 0.27 GPL24749 Sulfolobus acidocaldarius 2285 NA NA
GSE113716 GSE113716_DESeq2_results_t4_vs_t0.txt.gz anti-conservative anti-conservative 0.30 anti-conservative 0.27 GPL24939 Sulfolobus acidocaldarius 2285 NA NA
GSE113848 GSE113848_sleuth.de.results.wald.ctl.tsv.gz anti-conservative anti-conservative 0.67 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE113848 GSE113848_sleuth.de.results.wald.oe.tsv.gz anti-conservative anti-conservative 0.86 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE113900 GSE113900_Significant_genes.xlsx.gz anti-conservative anti-conservative 0.15 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE113954 GSE113954_Warm_TRPM2-KO-1_Warm_WT-1.anno.txt.gz anti-conservative anti-conservative 0.68 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE113954 GSE113954_Warm_TRPM2-KO-2_Warm_WT-2.anno.txt.gz anti-conservative other 0.63 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE113979 GSE113979_DESeq2.txt.gz anti-conservative other 0.88 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE113979 GSE113979_DESeq2.txt.gz anti-conservative other 0.88 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE114336 GSE114336_Merkel_Keratinocytes_DEseq_RPKM.xlsx anti-conservative anti-conservative 0.54 NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE114346 GSE114346_LEH_differential_expression_analysis_table.csv.gz anti-conservative anti-conservative 0.88 anti-conservative 0.63 GPL17021 Mus musculus 10090 NA NA
GSE114363 GSE114363_gene_exp.diff.txt.gz anti-conservative other 0.93 NA NA NA GPL19580 Arabidopsis thaliana 3702 NA NA
GSE114463 GSE114463_DESeq2_genes_diffexp_by_fc_N2_15_vs_O2_15.csv.gz anti-conservative anti-conservative 0.92 NA NA NA GPL22304 Clostridioides difficile 1496 NA NA
GSE114463 GSE114463_DESeq2_genes_diffexp_by_fc_N2_60_vs_O2_60.csv.gz anti-conservative anti-conservative 0.59 anti-conservative 0.42 GPL22304 Clostridioides difficile 1496 NA NA
GSE114917 GSE114917_High_vs_Low_LP4_removed_all_genes.tsv.gz anti-conservative anti-conservative 0.44 anti-conservative 0.19 GPL17439 Escherichia coli str. K-12 substr. MG1655 511145 NA NA
GSE114941 GSE114941_DEseq2.xlsx anti-conservative other 0.69 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE115266 GSE115266_Horvath01_DESeq2_Differential_Gene_Expression.csv.gz anti-conservative anti-conservative 0.49 anti-conservative 0.19 GPL11154 Homo sapiens 9606 NA NA
GSE115950 GSE115950_DESeq2_genes_diffexp_by_fc_Migr_mLN_SPF_vs_Migr_pLN_SPF.csv.gz anti-conservative anti-conservative 0.78 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE116230 GSE116230_Smad4ff_vs_Smad4iECKO.deseq.res.csv.gz anti-conservative anti-conservative 0.61 anti-conservative 0.65 GPL19057 Mus musculus 10090 NA NA
GSE116458 GSE116458_nESCs_EpiLSCs_desep_table.txt.gz anti-conservative anti-conservative 0.91 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE116587 GSE116587_Littleetal_RNASEQ.xlsx anti-conservative other 0.84 NA NA NA GPL25281 Proteus mirabilis 584 NA NA
GSE116776 GSE116776_KO_vs_WT.txt.gz anti-conservative other 0.70 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE116915 GSE116915_Microbead_vs_control_raw_data_RNAseq_mouse.define_DESeq2.txt.gz anti-conservative other 0.88 NA NA NA GPL24247 Mus musculus 10090 NA NA
GSE116916 GSE116916_Processed_data_Wareham2.txt.gz anti-conservative other 0.99 NA NA NA GPL24247 Mus musculus 10090 NA NA
GSE117433 GSE117433_37flow_v_37static.RNAseqgene_exp.diff.gz anti-conservative other 0.68 NA NA NA GPL19036 Candida albicans 5476 NA NA
GSE117433 GSE117433_RTflow_v_GSE117433_37Static.RNAseqgene_exp.diff.gz anti-conservative anti-conservative 0.59 NA NA NA GPL19036 Candida albicans 5476 NA NA
GSE117978 GSE117978_groupBvsgroupA.complete.txt.gz anti-conservative other 0.98 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE118116 GSE118116_sleuth_test_results.txt.gz anti-conservative anti-conservative 0.51 NA NA NA GPL25420 Rhodobacter capsulatus SB 1003 272942 NA NA
GSE118116 GSE118116_sleuth_test_results.txt.gz anti-conservative anti-conservative 0.51 NA NA NA GPL25421 Rhodobacter capsulatus DE442 1415160 NA NA
GSE118217 GSE118217_AN_vs_AW.xlsx.gz anti-conservative other 0.86 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE118334 GSE118334_Wnt11_WK_RNAseq_DiffExp.txt.gz-set-0 anti-conservative other 0.77 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE118334 GSE118334_Wnt11_WK_RNAseq_DiffExp.txt.gz-set-1 anti-conservative other 0.77 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE118334 GSE118334_Wnt11_WK_RNAseq_DiffExp.txt.gz-set-2 anti-conservative anti-conservative 0.31 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE118334 GSE118334_Wnt11_WK_RNAseq_DiffExp.txt.gz-set-3 anti-conservative other 0.21 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE118334 GSE118334_Wnt11_NP_RNAseq_DiffExp.txt.gz anti-conservative anti-conservative 0.05 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE118423 GSE118423_alc.csv.gz anti-conservative anti-conservative 0.98 anti-conservative 0.80 GPL23246 Synechocystis sp. PCC 6803 1148 NA NA
GSE118490 GSE118490_HCT116_DE_Results.xlsx-sheet-HCT116_results_raw_noNA anti-conservative anti-conservative 0.32 anti-conservative 0.22 GPL16791 Homo sapiens 9606 NA NA
GSE118552 GSE118552_sorted_results.csv.gz anti-conservative anti-conservative 0.57 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE119046 GSE119046_rpoS819_vs_wtrpoS.csv.gz anti-conservative other 0.55 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE119208 GSE119208_F613-TCS.txt.gz anti-conservative anti-conservative 0.10 NA NA NA GPL24101 Streptomyces clavuligerus 1901 NA NA
GSE119273 GSE119273_LR73_AC_results.txt.gz anti-conservative other 0.83 NA NA NA GPL22327 Cricetulus griseus 10029 NA NA
GSE119325 GSE119325_day6vsday2_gene_description.txt.gz anti-conservative other 0.68 NA NA NA GPL21785 Arabidopsis thaliana 3702 NA NA
GSE119332 GSE119332_control_vs_rraga_mutants_analyzed.xlsx.gz anti-conservative anti-conservative 0.94 NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE119333 GSE119333_BSGX001-vs-BSGX001_thi2.DESeq.diff.txt.gz anti-conservative anti-conservative 0.38 anti-conservative 0.25 GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE121173 GSE121173_gene_exp.diff.txt.gz anti-conservative anti-conservative 0.83 NA NA NA GPL16790 Mus musculus 10090 NA NA
GSE121725 GSE121725_OVVSGSF_circRNA_differential_expression.xlsx anti-conservative anti-conservative 0.52 NA NA NA GPL22146 Capra hircus 9925 NA NA
GSE121725 GSE121725_Transcript_differential_expression.xlsx anti-conservative other 0.82 NA NA NA GPL22146 Capra hircus 9925 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-0 anti-conservative other 0.77 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-1 anti-conservative other 0.82 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-2 anti-conservative anti-conservative 0.60 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-3 anti-conservative anti-conservative 0.74 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-4 anti-conservative anti-conservative 0.77 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-5 anti-conservative anti-conservative 0.62 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-6 anti-conservative other 0.68 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-7 anti-conservative anti-conservative 0.67 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-8 anti-conservative other 0.70 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-9 anti-conservative anti-conservative 0.70 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-10 anti-conservative anti-conservative 0.68 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-11 anti-conservative anti-conservative 0.70 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-12 anti-conservative other 0.71 NA NA NA GPL25735 Mustela putorius furo 9669 NA NA
GSE122095 GSE122095_N-VS-W.DEGseq_Method.GeneDiffExp.txt.gz anti-conservative anti-conservative 0.32 NA NA NA GPL25761 Iris tectorum 114617 NA NA
GSE122483 GSE122483_ren_gene.description.txt.gz anti-conservative anti-conservative 0.49 NA NA NA GPL25805 Lactobacillus salivarius str. Ren 1194971 NA NA
GSE123403 GSE123403_CDK0005_PAO1_results_all.csv.gz anti-conservative anti-conservative 0.89 anti-conservative 0.63 GPL20881 Pseudomonas aeruginosa 287 NA NA
GSE123459 GSE123459_WTCvsWTV.xlsx anti-conservative anti-conservative 0.60 anti-conservative 0.36 GPL21785 Arabidopsis thaliana 3702 NA NA
GSE123554 GSE123554_payelg_WT_Fis_gene_exp_Final.xlsx-sheet-Sheet1 anti-conservative other 0.68 NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE17970 GSE17970_supplemental_table_1.xls.gz anti-conservative other 0.47 NA NA NA GPL9100 Chlamydomonas reinhardtii 3055 NA NA
GSE17970 GSE17970_supplemental_table_1.xls.gz anti-conservative other 0.47 NA NA NA GPL9152 Chlamydomonas reinhardtii 3055 NA NA
GSE32038 GSE32038_cds.diff.gz anti-conservative anti-conservative 0.07 NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE32038 GSE32038_promoters.diff.gz anti-conservative anti-conservative 0.05 NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE32038 GSE32038_splicing.diff.gz anti-conservative anti-conservative 0.06 NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE33736 GSE33736_HAmCqG0_G8expression.txt.gz anti-conservative other 0.60 NA NA NA GPL14891 Culex quinquefasciatus 7176 NA NA
GSE36781 GSE36781_gene_exp_diff.txt.gz anti-conservative other 0.96 NA NA NA GPL15377 Alternaria brassicicola 29001 NA NA
GSE36959 GSE36959_gene_exp_diff.txt.gz anti-conservative other 0.64 NA NA NA GPL15388 Nannochloropsis oceanica 145522 NA NA
GSE37682 GSE37682_RAW.txt.gz anti-conservative anti-conservative 0.70 NA NA NA GPL15149 Candida albicans 5476 NA NA
GSE39812 GSE39812_FB_result_transcript_summary.tsv.txt.gz anti-conservative other 0.81 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40478 GSE40478_output_score.txt.gz anti-conservative anti-conservative 0.39 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE40948 GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz anti-conservative other 0.50 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE40948 GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz anti-conservative other 0.50 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.27 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.25 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.36 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.37 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.26 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE41766 GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz anti-conservative other 0.74 NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE41873 GSE41873_FPKM_all_genes_from_CuffDiff.txt.gz anti-conservative other 0.74 NA NA NA GPL16222 Plasmodium yoelii yoelii 17XNL 352914 NA NA
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-0 anti-conservative anti-conservative 0.65 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-1 anti-conservative other 0.99 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-2 anti-conservative anti-conservative 0.83 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43189 GSE43189_processed_h99_rim101.csv.gz anti-conservative anti-conservative 0.46 NA NA NA GPL16431 Cryptococcus neoformans 5207 NA NA
GSE44402 GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz anti-conservative anti-conservative 0.24 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE45788 GSE45788_S72_2_RefII_S72_1_Emf_exp.cuff.gz anti-conservative other 0.83 NA NA NA GPL16962 Enterococcus faecalis 1351 NA NA
GSE48166 GSE48166_Cufflinks_FPKM.txt.gz anti-conservative other 0.95 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE48166 GSE48166_Cufflinks_FPKM.txt.gz anti-conservative other 0.95 NA NA NA GPL9442 Homo sapiens 9606 NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-0 anti-conservative anti-conservative 0.27 NA NA NA GPL17424 Dorcoceras hygrometricum 472368 NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-1 anti-conservative anti-conservative 0.16 NA NA NA GPL17424 Dorcoceras hygrometricum 472368 NA NA
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz anti-conservative anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz anti-conservative anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz anti-conservative anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE49587 GSE49587_ORvSmn_DEUtable.txt.gz anti-conservative anti-conservative 0.94 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 anti-conservative other 0.69 NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 anti-conservative other 0.69 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative anti-conservative 0.51 anti-conservative 0.17 GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative anti-conservative 0.51 anti-conservative 0.17 GPL14602 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative anti-conservative 0.85 NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative anti-conservative 0.85 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative anti-conservative 0.68 anti-conservative 0.31 GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative anti-conservative 0.68 anti-conservative 0.31 GPL14602 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative anti-conservative 0.86 NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative anti-conservative 0.86 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-0 anti-conservative other 0.63 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-1 anti-conservative other 0.64 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50535 GSE50535_diffexp_2.txt.gz anti-conservative other 0.56 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-0 anti-conservative other 0.61 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-1 anti-conservative anti-conservative 0.30 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50708 GSE50708_DE_result.txt.gz anti-conservative anti-conservative 0.32 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE51037 GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz anti-conservative anti-conservative 0.90 NA NA NA GPL17280 Mycobacterium tuberculosis H37Rv 83332 NA NA
GSE51645 GSE51645_ASE_processed_data.txt.gz anti-conservative other 0.98 NA NA NA GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE51645 GSE51645_ASE_processed_data.txt.gz anti-conservative other 0.98 NA NA NA GPL9377 Saccharomyces cerevisiae 4932 NA NA
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative anti-conservative 0.76 NA NA NA GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative anti-conservative 0.76 NA NA NA GPL9377 Saccharomyces cerevisiae 4932 NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative other 0.35 NA NA NA GPL13309 Drosophila ananassae 7217 NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative other 0.35 NA NA NA GPL13310 Drosophila pseudoobscura 7237 NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative other 0.35 NA NA NA GPL15872 Drosophila yakuba 7245 NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative other 0.35 NA NA NA GPL17883 Drosophila pseudoobscura 7237 NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative other 0.42 NA NA NA GPL13309 Drosophila ananassae 7217 NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative other 0.42 NA NA NA GPL13310 Drosophila pseudoobscura 7237 NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative other 0.42 NA NA NA GPL15872 Drosophila yakuba 7245 NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative other 0.42 NA NA NA GPL17883 Drosophila pseudoobscura 7237 NA NA
GSE52153 GSE52153_czt-1DMSOvsczt-1STS.txt.gz anti-conservative other 0.55 NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE52153 GSE52153_wtDMSOvswtSTS.txt.gz anti-conservative other 0.71 NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE52402 GSE52402_B19P16_B20P3_RPKM.txt.gz anti-conservative other 0.75 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53040 GSE53040_wtDMSOvswtXP13.txt.gz anti-conservative other 0.69 NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE54440 GSE54440_WT_Z2_RNAseq_rep2.txt.gz anti-conservative anti-conservative 0.51 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE54846 GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz anti-conservative other 0.79 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative anti-conservative 0.56 NA NA NA GPL18362 Pseudomonas aeruginosa MPAO1/P1 1131757 NA NA
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative anti-conservative 0.56 NA NA NA GPL18363 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative anti-conservative 0.68 NA NA NA GPL18362 Pseudomonas aeruginosa MPAO1/P1 1131757 NA NA
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative anti-conservative 0.68 NA NA NA GPL18363 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative other 0.67 NA NA NA GPL18457 Thalassiosira pseudonana 35128 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative other 0.67 NA NA NA GPL18458 Fragilariopsis cylindrus 186039 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative other 0.67 NA NA NA GPL18459 Pseudo-nitzschia multiseries 37319 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative other 0.57 NA NA NA GPL18457 Thalassiosira pseudonana 35128 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative other 0.57 NA NA NA GPL18458 Fragilariopsis cylindrus 186039 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative other 0.57 NA NA NA GPL18459 Pseudo-nitzschia multiseries 37319 NA NA
GSE56169 GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz anti-conservative other 0.37 NA NA NA GPL15472 Xenopus tropicalis 8364 NA NA
GSE56169 GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz anti-conservative other 0.37 NA NA NA GPL9320 Xenopus tropicalis 8364 NA NA
GSE56346 GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz anti-conservative anti-conservative 0.37 anti-conservative 0.23 GPL18499 Phaeodactylum tricornutum 2850 NA NA
GSE57217 GSE57217_bck1wt_geneexp_diff.txt.gz anti-conservative anti-conservative 0.73 NA NA NA GPL14571 Cryptococcus neoformans 5207 NA NA
GSE57217 GSE57217_mkk2wt_geneexp_diff.txt.gz anti-conservative other 0.80 NA NA NA GPL14571 Cryptococcus neoformans 5207 NA NA
GSE57217 GSE57217_mpk1wt_geneexp_diff.txt.gz anti-conservative anti-conservative 0.77 NA NA NA GPL14571 Cryptococcus neoformans 5207 NA NA
GSE57397 GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz anti-conservative anti-conservative 0.46 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57397 GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz anti-conservative anti-conservative 0.49 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57397 GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz anti-conservative anti-conservative 0.41 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57397 GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz anti-conservative anti-conservative 0.45 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57482 GSE57482_output_score.txt.gz anti-conservative anti-conservative 0.29 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative anti-conservative 0.62 NA NA NA GPL18736 Nitrosomonas europaea 915 NA NA
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative anti-conservative 0.62 NA NA NA GPL18737 Nitrobacter winogradskyi 913 NA NA
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative anti-conservative 0.62 NA NA NA GPL18738 Nitrobacter winogradskyi 913 NA NA
GSE58053 GSE58053_25mm-over-0mm.txt.gz anti-conservative anti-conservative 0.57 NA NA NA GPL18739 Nitrobacter winogradskyi 913 NA NA
GSE58053 GSE58053_25mm-over-1mm.txt.gz anti-conservative anti-conservative 0.69 NA NA NA GPL18739 Nitrobacter winogradskyi 913 NA NA
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-0 anti-conservative other 0.76 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-1 anti-conservative other 0.67 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz anti-conservative other 0.48 NA NA NA GPL17162 Coprinopsis cinerea 5346 NA NA
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz anti-conservative other 0.48 NA NA NA GPL18872 Coprinopsis cinerea 5346 NA NA
GSE59571 GSE59571_S13113_genesdiff.xlsx anti-conservative other 0.70 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE59715 GSE59715_finalHiCRNAseqTable.csv.gz anti-conservative anti-conservative 0.73 anti-conservative 0.44 GPL13657 Caenorhabditis elegans 6239 NA NA
GSE59814 GSE59814_processed_data.txt.gz anti-conservative anti-conservative 0.63 NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE59980 GSE59980_RNA-seq_598-SKD.txt.gz-set-1 anti-conservative other 0.41 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60191 GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1 anti-conservative anti-conservative 0.38 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60968 GSE60968_VEC_vs_CRE_DE.txt.gz anti-conservative anti-conservative 0.38 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61491 GSE61491_CHDKD_differential_expression.txt.gz anti-conservative anti-conservative 0.95 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61915 GSE61915_FilteredDifferentialExpression_min_10reads_3M-24M.xls.gz anti-conservative anti-conservative 0.62 anti-conservative 0.48 GPL13112 Mus musculus 10090 NA NA
GSE61915 GSE61915_FilteredDifferentialExpression_min_10reads_3M-29M.xls.gz anti-conservative anti-conservative 0.80 anti-conservative 0.69 GPL13112 Mus musculus 10090 NA NA
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz anti-conservative other 0.96 NA NA NA GPL15463 Zea mays 4577 NA NA
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz anti-conservative other 0.96 NA NA NA GPL19255 Zea mays 4577 NA NA
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-M VS LYP9-M anti-conservative other 0.81 NA NA NA GPL15432 Oryza sativa 4530 NA NA
GSE62785 GSE62785_Table_S1_Genes_differentially_expressed_in_hns_mutant_in_mid-exponential_phase.xls.gz-sheet-status = OK anti-conservative anti-conservative 0.86 NA NA NA GPL19265 Vibrio cholerae 666 NA NA
GSE62785 GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok anti-conservative anti-conservative 0.78 NA NA NA GPL19265 Vibrio cholerae 666 NA NA
GSE63141 GSE63141_eTMglc_gene_exp.diff.gz anti-conservative other 0.95 NA NA NA GPL19399 Thermotoga maritima MSB8 243274 NA NA
GSE63141 GSE63141_eTMgly_gene_exp.diff.gz anti-conservative anti-conservative 0.78 NA NA NA GPL19399 Thermotoga maritima MSB8 243274 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-5 anti-conservative other 0.99 NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63510 GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz anti-conservative other 0.63 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz anti-conservative other 0.84 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz anti-conservative anti-conservative 0.72 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz anti-conservative anti-conservative 0.84 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz anti-conservative anti-conservative 0.84 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE63707 GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz anti-conservative other 0.81 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE63836 GSE63836_C15Dx_versus_Untr.DESeq.txt.gz anti-conservative other 0.76 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-short 3’UTR transcripts(<350nt) anti-conservative anti-conservative 0.90 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-medium 3’UTR transcripts anti-conservative anti-conservative 0.95 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt) anti-conservative anti-conservative 0.87 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE64242 GSE64242_cufdiff_isoform_exp.diff.gz anti-conservative other 0.93 NA NA NA GPL16439 Brassica juncea 3707 NA NA
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz anti-conservative anti-conservative 0.61 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE65072 GSE65072_DESeq_plusDOX_minusDOX.xlsx anti-conservative other 0.62 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE65487 GSE65487_deseq.rminus_rplus.ensembl.csv.gz anti-conservative other 0.68 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE65487 GSE65487_deseq.rplus_gplus.ensembl.csv.gz anti-conservative other 0.50 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE65935 GSE65935_DKOrvsDKOnr_diffexp.txt.gz anti-conservative other 0.63 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE65935 GSE65935_WTvsDKOnr_diffexp.txt.gz anti-conservative other 0.57 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE65935 GSE65935_WTvsDKOr_diffexp.txt.gz anti-conservative other 0.54 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE65973 GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz anti-conservative anti-conservative 0.41 anti-conservative 0.34 GPL9250 Mus musculus 10090 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-0 anti-conservative other 0.65 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-0 anti-conservative other 0.65 NA NA NA GPL17301 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-1 anti-conservative other 0.62 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-1 anti-conservative other 0.62 NA NA NA GPL17301 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-2 anti-conservative other 0.63 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-2 anti-conservative other 0.63 NA NA NA GPL17301 Homo sapiens 9606 NA NA
GSE66793 GSE66793_cmp1-3-geo-gene.tsv.gz anti-conservative anti-conservative 0.88 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66822 GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz anti-conservative anti-conservative 0.86 anti-conservative 0.79 GPL18635 Mus musculus 10090 NA NA
GSE67334 GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz anti-conservative other 0.79 NA NA NA GPL16790 Mus musculus 10090 NA NA
GSE67646 GSE67646_DESeq_1.10.1.txt.gz anti-conservative other 0.67 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE67674 GSE67674_RNA-seq_analysis_PBSDMSOvsPBSGSK-J4.txt.gz anti-conservative other 0.95 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE67756 GSE67756_LA2A-vs-LC2A.compare.txt.gz anti-conservative anti-conservative 0.42 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE67756 GSE67756_LB2A-vs-LA2A.compare.txt.gz anti-conservative anti-conservative 0.44 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE67756 GSE67756_LB2A-vs-LC2A.compare.txt.gz anti-conservative anti-conservative 0.53 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE67756 GSE67756_LB2A-vs-LF1A.compare.txt.gz anti-conservative anti-conservative 0.49 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz anti-conservative anti-conservative 0.29 anti-conservative 0.13 GPL13112 Mus musculus 10090 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz anti-conservative anti-conservative 0.27 anti-conservative 0.11 GPL13112 Mus musculus 10090 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz anti-conservative anti-conservative 0.29 anti-conservative 0.13 GPL13112 Mus musculus 10090 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz anti-conservative other 0.52 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz anti-conservative anti-conservative 0.27 anti-conservative 0.11 GPL13112 Mus musculus 10090 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz anti-conservative other 0.52 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative other 0.56 NA NA NA GPL20096 Camponotus castaneus 105051 NA NA
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative other 0.56 NA NA NA GPL20097 Camponotus castaneus 105051 NA NA
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative other 0.56 NA NA NA GPL20098 Ophiocordyceps unilateralis 268505 NA NA
GSE68998 GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz anti-conservative anti-conservative 0.72 anti-conservative 0.47 GPL17021 Mus musculus 10090 NA NA
GSE69001 GSE69001_DE_list_planktonic_v_biolfim.txt.gz anti-conservative anti-conservative 0.44 NA NA NA GPL20211 Clostridioides difficile R20291 645463 NA NA
GSE69001 GSE69001_DE_list_planktonic_v_plate.txt.gz anti-conservative anti-conservative 0.33 NA NA NA GPL20211 Clostridioides difficile R20291 645463 NA NA
GSE69001 GSE69001_DE_list_plate_v_biofilm.txt.gz anti-conservative anti-conservative 0.38 NA NA NA GPL20211 Clostridioides difficile R20291 645463 NA NA
GSE69110 GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz anti-conservative other 0.68 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE69876 GSE69876_results.csv.gz anti-conservative anti-conservative 0.35 anti-conservative 0.18 GPL11154 Homo sapiens 9606 NA NA
GSE70093 GSE70093_Supplementary_file_1.xls.gz-sheet-Sharbati Grain anti-conservative anti-conservative 0.73 NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE70093 GSE70093_Supplementary_file_1.xls.gz-sheet-Lalat Grain anti-conservative anti-conservative 0.73 NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE70093 GSE70093_Supplementary_file_1.xls.gz-sheet-Sharbati Root anti-conservative anti-conservative 0.73 NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE70093 GSE70093_Supplementary_file_1.xls.gz-sheet-Lalat Root anti-conservative anti-conservative 0.53 NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE70141 GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz anti-conservative other 0.67 NA NA NA GPL15643 Dictyostelium discoideum 44689 NA NA
GSE70141 GSE70141_Ax2_0H_1_2_Ax2_10H_1_2_DESeq.results.genenames.txt.gz anti-conservative anti-conservative 0.23 anti-conservative 0.06 GPL15643 Dictyostelium discoideum 44689 NA NA
GSE70141 GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz anti-conservative anti-conservative 0.31 anti-conservative 0.15 GPL15643 Dictyostelium discoideum 44689 NA NA
GSE70228 GSE70228_ThermococcusIsoforms_exp.diff.xlsx anti-conservative anti-conservative 0.85 NA NA NA GPL20620 Thermococcus 2263 NA NA
GSE70488 GSE70488_Day_vs_Night_sSeq.txt.gz anti-conservative anti-conservative 0.35 NA NA NA GPL14749 Acropora millepora 45264 NA NA
GSE71185 GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative anti-conservative 0.42 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71185 GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative anti-conservative 0.53 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz anti-conservative other 0.90 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative anti-conservative 0.77 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71539 GSE71539_TP0vsTP23_gene_results.txt.gz anti-conservative other 0.86 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE71539 GSE71539_TP0vsTP23_tag_results.txt.gz anti-conservative anti-conservative 0.85 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE71710 GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz anti-conservative anti-conservative 0.84 anti-conservative 0.79 GPL11154 Homo sapiens 9606 NA NA
GSE71862 GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz anti-conservative anti-conservative 0.46 anti-conservative 0.45 GPL18460 Homo sapiens 9606 NA NA
GSE71902 GSE71902_WILD-vs-CPH2.txt.gz anti-conservative anti-conservative 0.83 NA NA NA GPL19036 Candida albicans 5476 NA NA
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+EGFP_compared_to_siNT+EGFP.txt.gz anti-conservative other 0.96 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72390 GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx anti-conservative other 0.90 NA NA NA GPL20852 Oncorhynchus keta 8018 NA NA
GSE72491 GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz anti-conservative anti-conservative 0.72 anti-conservative 0.68 GPL17021 Mus musculus 10090 NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative anti-conservative 0.80 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative anti-conservative 0.80 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative anti-conservative 0.82 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative anti-conservative 0.82 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE74103 GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative anti-conservative 0.62 anti-conservative 0.53 GPL13760 Nicotiana tabacum 4097 NA NA
GSE74103 GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative anti-conservative 0.42 anti-conservative 0.27 GPL13760 Nicotiana tabacum 4097 NA NA
GSE74103 GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative anti-conservative 0.29 anti-conservative 0.23 GPL13760 Nicotiana tabacum 4097 NA NA
GSE74168 GSE74168_expressed_transcripts_RNAseq_GLIrnai_posterior_midgut_EC.txt.gz anti-conservative other 0.49 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE74171 GSE74171_expressed_transcript_aging_RNAseq_posterior_midgut.txt.gz anti-conservative other 0.58 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE74176 GSE74176_wt-SPL_line1-SPL_annotated.txt.gz anti-conservative anti-conservative 0.85 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74554 GSE74554_Diff_All_genes_A30_C30.csv.gz anti-conservative anti-conservative 0.38 anti-conservative 0.34 GPL21093 Lactococcus lactis subsp. lactis 1360 NA NA
GSE74920 GSE74920_SupplementalTable1.xlsx.gz anti-conservative other 0.56 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74920 GSE74920_SupplementalTable3.xlsx.gz anti-conservative other 0.78 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74929 GSE74929_Diff_Exp.txt.gz anti-conservative other 0.33 NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S1 anti-conservative other 0.56 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S3 anti-conservative other 0.78 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75147 GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz anti-conservative anti-conservative 0.02 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz anti-conservative anti-conservative 0.02 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz anti-conservative anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.up.G166.list.txt.gz anti-conservative anti-conservative 0.04 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75510 GSE75510_diffExonExprZH1vsB6.txt.gz anti-conservative anti-conservative 0.99 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75510 GSE75510_diffExonExprZH3vsB6.txt.gz anti-conservative anti-conservative 0.96 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75731 GSE75731_ckvsd119a_gene_exp_diff.txt.gz anti-conservative anti-conservative 0.49 NA NA NA GPL20326 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE75731 GSE75731_ckvsdrug_gene_exp_diff.txt.gz anti-conservative anti-conservative 0.64 NA NA NA GPL20326 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE75731 GSE75731_ckvsv149a_gene_exp_diff.txt.gz anti-conservative anti-conservative 0.73 NA NA NA GPL20326 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_down anti-conservative other 0.76 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75833 GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz anti-conservative other 0.65 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE75878 GSE75878_promoters.diff.gz anti-conservative other 0.44 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE75878 GSE75878_splicing.diff.gz anti-conservative other 0.38 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE75962 GSE75962_control_vs_H2O2.DEseq.txt.gz anti-conservative other 0.77 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75993 GSE75993_processed_data.xls.gz-sheet-1_WT_vs_KO_DESeq_All anti-conservative other 0.94 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76482 GSE76482_deseq.comparisons.xls.gz-sheet-14.5 wt VS 14.5 S1pr2 null anti-conservative other 0.83 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE76482 GSE76482_deseq.comparisons.xls.gz-sheet-14.5+2 CTRL VS 14.5+2+JTE+CTGF anti-conservative other 0.61 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE76482 GSE76482_deseq.comparisons.xls.gz-sheet-14.5+2+JTE VS 14.5+2+JTE+CTGF anti-conservative other 0.81 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77025 GSE77025_gene_exp.diff.gz anti-conservative anti-conservative 0.35 NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE77044 GSE77044_comparison2.xls.gz anti-conservative anti-conservative 0.75 anti-conservative 0.72 GPL21354 Entamoeba histolytica HM-1:IMSS 294381 NA NA
GSE77077 GSE77077_HT_data_36hpf.xls.gz anti-conservative anti-conservative 0.47 NA NA NA GPL9319 Danio rerio 7955 NA NA
GSE77398 GSE77398_mal_all6_cuffdiff_genes.xls.gz anti-conservative other 0.76 NA NA NA GPL21078 Plasmodium falciparum 5833 NA NA
GSE78240 GSE78240_DESeq_Output.txt.gz anti-conservative other 0.82 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE78824 GSE78824_Cuffdiff_transcript_differential_expression_testing.tab.gz anti-conservative other 0.78 NA NA NA GPL21548 Cryptococcus neoformans var. grubii H99 235443 NA NA
GSE78967 GSE78967_Deseq_Analysis.xlsx anti-conservative other 0.51 NA NA NA GPL21570 Schistosoma mansoni 6183 NA NA
GSE79039 GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative anti-conservative 0.62 anti-conservative 0.41 GPL17021 Mus musculus 10090 NA NA
GSE79039 GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative anti-conservative 0.73 anti-conservative 0.52 GPL17021 Mus musculus 10090 NA NA
GSE79143 GSE79143_SNPCountsTable.txt.gz anti-conservative anti-conservative 0.49 NA NA NA GPL15670 Ovis aries 9940 NA NA
GSE79435 GSE79435_DESeq2_genes_diffexp_by_fc_mLN-GF_vs_mLN-SPF.csv.gz anti-conservative anti-conservative 0.74 anti-conservative 0.53 GPL17021 Mus musculus 10090 NA NA
GSE79435 GSE79435_DESeq2_genes_diffexp_by_fc_pLN-GF_vs_mLN-GF.csv.gz anti-conservative anti-conservative 0.76 anti-conservative 0.54 GPL17021 Mus musculus 10090 NA NA
GSE79435 GSE79435_DESeq2_genes_diffexp_by_fc_pLN-GF_vs_pLN-SPF.csv.gz anti-conservative anti-conservative 0.89 anti-conservative 0.77 GPL17021 Mus musculus 10090 NA NA
GSE79435 GSE79435_DESeq2_genes_diffexp_by_fc_pLN-SPF_vs_mLN-SPF.csv.gz anti-conservative anti-conservative 0.71 anti-conservative 0.58 GPL17021 Mus musculus 10090 NA NA
GSE79776 GSE79776_Veh_V_EGF_DESeq_Results.txt.gz anti-conservative other 0.66 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE79830 GSE79830_Sp2_Wdr70del_vs_Sp1_Wt.Differential_analysis_results.txt.gz anti-conservative anti-conservative 0.83 NA NA NA GPL17225 Schizosaccharomyces pombe 4896 NA NA
GSE79916 GSE79916_Dataset_S1-JUM_output_for_differential_AS_analyses_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz anti-conservative anti-conservative 0.13 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE80135 GSE80135_Lipo_siProx_SC_results.csv.gz anti-conservative other 0.95 NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE80135 GSE80135_siNeg_siProx_sig_results.csv.gz anti-conservative other 0.79 NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz anti-conservative anti-conservative 0.56 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative anti-conservative 0.03 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 anti-conservative anti-conservative 0.54 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80348 GSE80348_20160316_6h_wt_vs_mu.xlsx anti-conservative other 0.62 NA NA NA GPL21741 Danio rerio 7955 NA NA
GSE80349 GSE80349_results.txt.gz-set-0 anti-conservative anti-conservative 0.07 NA NA NA GPL21742 Schizosaccharomyces pombe 4896 NA NA
GSE80354 GSE80354_Gata6_DEseq2_res.csv.gz anti-conservative other 0.95 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE80354 GSE80354_Gata6_DEseq2_res.csv.gz anti-conservative other 0.95 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE81043 GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz anti-conservative anti-conservative 0.48 anti-conservative 0.14 GPL16791 Homo sapiens 9606 NA NA
GSE81059 GSE81059_cns-control_vs_head-control.csv.gz anti-conservative other 0.52 NA NA NA GPL15553 Schmidtea mediterranea 79327 NA NA
GSE81069 GSE81069_1vs2_DESeq_func_added.csv.gz anti-conservative other 0.68 NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE81069 GSE81069_1vs3_DESeq_func_added.csv.gz anti-conservative other 0.82 NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE81069 GSE81069_4vs5_DESeq_func_added.csv.gz anti-conservative other 0.74 NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE81128 GSE81128_DESeq2_Results.txt.gz anti-conservative anti-conservative 0.32 anti-conservative 0.14 GPL21813 Tetranychus urticae 32264 NA NA
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz anti-conservative anti-conservative 0.66 anti-conservative 0.59 GPL17021 Mus musculus 10090 NA NA
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz anti-conservative anti-conservative 0.56 anti-conservative 0.48 GPL17021 Mus musculus 10090 NA NA
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz anti-conservative anti-conservative 0.75 anti-conservative 0.69 GPL17021 Mus musculus 10090 NA NA
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv anti-conservative anti-conservative 0.63 anti-conservative 0.43 GPL18413 Danio rerio 7955 NA NA
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up anti-conservative anti-conservative 0.68 NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down anti-conservative anti-conservative 0.59 anti-conservative 0.48 GPL18413 Danio rerio 7955 NA NA
GSE82008 GSE82008_rTreg-aTreg-RPKM_log2FC_pval.txt.gz-set-0 anti-conservative anti-conservative 0.81 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE82134 GSE82134_NCBI_res_root_deseq_full.xlsx anti-conservative other 0.66 NA NA NA GPL21973 Hordeum vulgare 4513 NA NA
GSE83134 GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0 anti-conservative other 0.98 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE83218 GSE83218_HSC.txt.gz anti-conservative anti-conservative 0.88 anti-conservative 0.77 GPL17021 Mus musculus 10090 NA NA
GSE83375 GSE83375_GB_glia.FPKM.txt.gz anti-conservative other 0.66 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE83541 GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz anti-conservative anti-conservative 0.82 anti-conservative 0.70 GPL17021 Mus musculus 10090 NA NA
GSE83736 GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz anti-conservative other 0.62 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE83736 GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz anti-conservative other 0.67 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84699 GSE84699_RNAseq_cpx_vs_dmso_DESeq2.txt.gz anti-conservative other 0.60 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84699 GSE84699_RNAseq_cpx_vs_dmso_DESeq2.txt.gz anti-conservative other 0.60 NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE84737 GSE84737_All_genes_unfiltered_DE.txt.gz anti-conservative anti-conservative 0.45 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84737 GSE84737_Genes_filtered_DE.txt.gz anti-conservative anti-conservative 0.47 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE85321 GSE85321_Supplemental_Table_4_YAR_vs_YAD_RNA_seq_.xls.gz-sheet-EV_YAD_YAR_isoformexp anti-conservative other 0.46 NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE85329 GSE85329_IGF_project_IGF_results.txt.gz anti-conservative other 0.81 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_K27M_DMSO anti-conservative anti-conservative 0.78 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_H3WT_EPZ anti-conservative anti-conservative 0.84 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-K27M_DMSO_x_K27M_EPZ anti-conservative anti-conservative 0.85 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85554 GSE85554_deg_and_counts_table_new_read_counts.txt.gz anti-conservative anti-conservative 0.99 NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted anti-conservative other 0.64 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted anti-conservative other 0.58 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85847 GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz anti-conservative other 0.66 NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE86054 GSE86054_gene_expression.txt.gz anti-conservative other 0.96 NA NA NA GPL19132 Drosophila melanogaster 7227 NA NA
GSE86203 GSE86203_Rps26_dependent_recognition-DESeq.xlsx.gz-sheet-DESeq anti-conservative anti-conservative 0.54 anti-conservative 0.41 GPL19756 Saccharomyces cerevisiae 4932 NA NA
GSE86203 GSE86203_Rps3TAP_comparison-DESeq.xlsx.gz-sheet-R3vElu_DiffExp anti-conservative anti-conservative 0.41 anti-conservative 0.28 GPL19756 Saccharomyces cerevisiae 4932 NA NA
GSE86203 GSE86203_Rps3TAP_comparison-DESeq.xlsx.gz-sheet-R3vFT_DiffExp anti-conservative anti-conservative 0.81 anti-conservative 0.74 GPL19756 Saccharomyces cerevisiae 4932 NA NA
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01 anti-conservative other 0.93 NA NA NA GPL21297 Pseudomonas aeruginosa 287 NA NA
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PJ01vsPJ01dT anti-conservative other 0.96 NA NA NA GPL21297 Pseudomonas aeruginosa 287 NA NA
GSE86301 GSE86301_shCdGAP_vs_shCtl_fpkm_counts.txt.gz anti-conservative other 0.74 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87089 GSE87089_Supplementary_data.xls.gz-sheet-differentially expressed genes-set-0 anti-conservative anti-conservative 0.21 NA NA NA GPL15473 Capra hircus 9925 NA NA
GSE87089 GSE87089_Supplementary_data.xls.gz-sheet-differentially expressed genes-set-1 anti-conservative anti-conservative 0.05 NA NA NA GPL15473 Capra hircus 9925 NA NA
GSE87089 GSE87089_Supplementary_data.xls.gz-sheet-differentially expressed genes-set-2 anti-conservative anti-conservative 0.29 NA NA NA GPL15473 Capra hircus 9925 NA NA
GSE87167 GSE87167_all_genes.txt.gz anti-conservative anti-conservative 0.38 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE87398 GSE87398_gene_exp.diff.gz anti-conservative other 0.83 NA NA NA GPL22492 Acinetobacter baumannii ATCC 17978 400667 NA NA
GSE87398 GSE87398_genes_group_exp.diff.gz anti-conservative other 0.83 NA NA NA GPL22492 Acinetobacter baumannii ATCC 17978 400667 NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2 anti-conservative anti-conservative 0.25 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3 anti-conservative anti-conservative 0.23 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-1 anti-conservative anti-conservative 0.15 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3 anti-conservative anti-conservative 0.22 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87456 GSE87456_HypoxiaSQ20B_ExpressionData.txt.gz anti-conservative anti-conservative 0.83 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE87495 GSE87495_results_dds_gencode22.csv.gz anti-conservative anti-conservative 0.34 anti-conservative 0.15 GPL16791 Homo sapiens 9606 NA NA
GSE87706 GSE87706_SM_vs_RODI.txt.gz anti-conservative anti-conservative 0.29 anti-conservative 0.13 GPL17452 Staphylococcus aureus 1280 NA NA
GSE87916 GSE87916_S15207_DeSeq.xlsx anti-conservative other 0.97 NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE89004 GSE89004_ppGpp0_vs_H78_differential_all.xls.gz anti-conservative anti-conservative 0.45 anti-conservative 0.21 GPL22592 Pseudomonas protegens 380021 NA NA
GSE89238 GSE89238_SET2_KO_DESeq2_output.txt.gz anti-conservative anti-conservative 0.84 anti-conservative 0.67 GPL19756 Saccharomyces cerevisiae 4932 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_DESeq_significant-set-0 anti-conservative anti-conservative 0.27 anti-conservative 0.22 GPL11154 Homo sapiens 9606 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_DESeq_significant-set-0 anti-conservative anti-conservative 0.27 anti-conservative 0.22 GPL13112 Mus musculus 10090 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_DESeq_significant-set-1 anti-conservative anti-conservative 0.16 anti-conservative 0.15 GPL11154 Homo sapiens 9606 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_DESeq_significant-set-1 anti-conservative anti-conservative 0.16 anti-conservative 0.15 GPL13112 Mus musculus 10090 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_stau_deseq_ALL anti-conservative other 0.57 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_stau_deseq_ALL anti-conservative other 0.57 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_upf_deseq_ALL anti-conservative anti-conservative 0.49 anti-conservative 0.23 GPL11154 Homo sapiens 9606 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_upf_deseq_ALL anti-conservative anti-conservative 0.49 anti-conservative 0.23 GPL13112 Mus musculus 10090 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_DESeq_significant-set-0 anti-conservative anti-conservative 0.32 anti-conservative 0.27 GPL11154 Homo sapiens 9606 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_DESeq_significant-set-0 anti-conservative anti-conservative 0.32 anti-conservative 0.27 GPL13112 Mus musculus 10090 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_DESeq_significant-set-1 anti-conservative anti-conservative 0.24 anti-conservative 0.27 GPL11154 Homo sapiens 9606 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_DESeq_significant-set-1 anti-conservative anti-conservative 0.24 anti-conservative 0.27 GPL13112 Mus musculus 10090 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_stau_deseq_ALL anti-conservative other 0.61 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_stau_deseq_ALL anti-conservative other 0.61 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_upf_deseq_ALL anti-conservative other 0.55 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_upf_deseq_ALL anti-conservative other 0.55 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89773 GSE89773_combined_expression_table.txt.gz-set-0 anti-conservative anti-conservative 0.42 anti-conservative 0.21 GPL22662 Mycolicibacterium smegmatis 1772 NA NA
GSE89773 GSE89773_combined_expression_table.txt.gz-set-1 anti-conservative anti-conservative 0.50 anti-conservative 0.26 GPL22662 Mycolicibacterium smegmatis 1772 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI anti-conservative anti-conservative 0.48 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI anti-conservative anti-conservative 0.43 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI anti-conservative other 0.68 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90712 GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz anti-conservative anti-conservative 0.61 anti-conservative 0.36 GPL19057 Mus musculus 10090 NA NA
GSE90889 GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx anti-conservative other 0.80 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi anti-conservative anti-conservative 0.54 anti-conservative 0.37 GPL13112 Mus musculus 10090 NA NA
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi anti-conservative anti-conservative 0.82 anti-conservative 0.83 GPL13112 Mus musculus 10090 NA NA
GSE91388 GSE91388_DESeq2_output.txt.gz anti-conservative anti-conservative 0.46 anti-conservative 0.42 GPL16436 Solanum tuberosum 4113 NA NA
GSE91388 GSE91388_DESeq2_output.txt.gz anti-conservative anti-conservative 0.46 anti-conservative 0.42 GPL22257 Solanum tuberosum 4113 NA NA
GSE92720 GSE92720_Control_H32.xls.gz anti-conservative other 0.58 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE92971 GSE92971_run1513_gencode_DESeq2_lateFGFvsControl_gene_diff_rawcnt.txt.gz anti-conservative anti-conservative 0.95 anti-conservative 0.66 GPL16791 Homo sapiens 9606 NA NA
GSE93313 GSE93313_DESeq_2Dvs3D.txt.gz anti-conservative other 0.79 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE93313 GSE93313_DESeq_2DvsTranswell.txt.gz anti-conservative other 0.67 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE93313 GSE93313_DESeq_3DvsTranswell.txt.gz anti-conservative other 0.79 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE93547 GSE93547_LMvsWTM_cleaned_deseq2.csv.gz anti-conservative anti-conservative 0.51 anti-conservative 0.32 GPL22913 Vibrio parahaemolyticus RIMD 2210633 223926 NA NA
GSE93574 GSE93574_res_dds_LEKU_vs_LE.csv.gz anti-conservative anti-conservative 0.57 anti-conservative 0.40 GPL15103 Mus musculus 10090 NA NA
GSE93574 GSE93574_res_dds_LEKU_vs_LPS.csv.gz anti-conservative anti-conservative 0.41 anti-conservative 0.20 GPL15103 Mus musculus 10090 NA NA
GSE93574 GSE93574_res_dds_LE_vs_LPS.csv.gz anti-conservative anti-conservative 0.46 anti-conservative 0.23 GPL15103 Mus musculus 10090 NA NA
GSE93614 GSE93614_Air_Eth_Results.txt.gz anti-conservative anti-conservative 0.69 anti-conservative 0.59 GPL22923 Synechocystis sp. PCC 6803 1148 NA NA
GSE93684 GSE93684_S1-1A-vs-R1-1A.compare.txt.gz anti-conservative anti-conservative 0.30 NA NA NA GPL19524 Haloxylon ammodendron 151230 NA NA
GSE93774 GSE93774_Full_gene_list-Control_vs_KO.csv.gz anti-conservative other 0.74 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE93827 GSE93827_LMP1_2a_vs_GFP.txt.gz anti-conservative anti-conservative 0.51 anti-conservative 0.27 GPL19057 Mus musculus 10090 NA NA
GSE93877 GSE93877_NB4_RNASeq_ATRA.txt.gz anti-conservative anti-conservative 0.84 anti-conservative 0.75 GPL18573 Homo sapiens 9606 NA NA
GSE93877 GSE93877_NB4_RNASeq_DMSO.txt.gz anti-conservative anti-conservative 0.95 anti-conservative 0.93 GPL18573 Homo sapiens 9606 NA NA
GSE94017 GSE94017_ATO_versus_control_diff.xlsx anti-conservative other 0.70 NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE94280 GSE94280_DESeq2_results_Y_vs_O.txt.gz anti-conservative other 0.75 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE94512 GSE94512_NaPi_vs_Lys.txt.gz anti-conservative anti-conservative 0.99 anti-conservative 0.98 GPL17452 Staphylococcus aureus 1280 NA NA
GSE94818 GSE94818_Afu_RNAseq_processed_data.xls.gz-set-1 anti-conservative other 0.51 NA NA NA GPL23059 Aspergillus fumigatus 746128 NA NA
GSE94818 GSE94818_Afu_RNAseq_processed_data.xls.gz-set-2 anti-conservative other 0.37 NA NA NA GPL23059 Aspergillus fumigatus 746128 NA NA
GSE94818 GSE94818_Afu_RNAseq_processed_data.xls.gz-set-3 anti-conservative other 0.36 NA NA NA GPL23059 Aspergillus fumigatus 746128 NA NA
GSE94818 GSE94818_Afu_RNAseq_processed_data.xls.gz-set-4 anti-conservative other 0.40 NA NA NA GPL23059 Aspergillus fumigatus 746128 NA NA
GSE94818 GSE94818_Afu_RNAseq_processed_data.xls.gz-set-5 anti-conservative other 0.58 NA NA NA GPL23059 Aspergillus fumigatus 746128 NA NA
GSE95108 GSE95108_DEtest_wo_wt1.xlsx-sheet-DEtest anti-conservative other 0.99 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE95337 GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz anti-conservative other 0.67 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE95687 GSE95687_sleuthResults.txt.gz anti-conservative other 0.95 NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE96549 GSE96549_DESeq.L3NbVsL3NbBarcIR-orig-FDR1.1.txt.gz anti-conservative other 0.67 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE96549 GSE96549_DESeq.L3NbVsL3NbBarcIR-orig-FDR1.1.txt.gz anti-conservative other 0.67 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE96549 GSE96549_DESeq.dsBarcGDVsdsmCherry-orig-FDR1.1.txt.gz anti-conservative other 0.76 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE96549 GSE96549_DESeq.dsBarcGDVsdsmCherry-orig-FDR1.1.txt.gz anti-conservative other 0.76 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE96555 GSE96555_DESeq.ctrl48hVstatsf148h-orig-FDR1.1.txt.gz anti-conservative other 0.81 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE96555 GSE96555_DESeq.ctrl72hVstatsf172h-orig-FDR1.1.txt.gz anti-conservative other 0.62 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE96626 GSE96626_DE_TrtVsVeh.xlsx anti-conservative anti-conservative 0.89 anti-conservative 0.87 GPL11002 Mus musculus 10090 NA NA
GSE96960 GSE96960_DESeq2_genes_diffexp_by_fc_iTregs_plusVitC_vs_iTregs_negVitC.csv.gz anti-conservative anti-conservative 0.82 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz anti-conservative anti-conservative 0.26 anti-conservative 0.23 GPL15520 Homo sapiens 9606 NA NA
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz anti-conservative anti-conservative 0.26 anti-conservative 0.23 GPL18573 Homo sapiens 9606 NA NA
GSE96999 GSE96999_DESeq2_nextseq_output.txt.gz anti-conservative anti-conservative 0.46 anti-conservative 0.09 GPL15520 Homo sapiens 9606 NA NA
GSE96999 GSE96999_DESeq2_nextseq_output.txt.gz anti-conservative anti-conservative 0.46 anti-conservative 0.09 GPL18573 Homo sapiens 9606 NA NA
GSE97060 GSE97060_122KOMouse_SleuthOutput.txt.gz anti-conservative anti-conservative 0.57 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE97167 GSE97167_result_foldchange_deseq2.txt.gz anti-conservative other 0.99 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE97345 GSE97345_Cassette_AARap_diffexp.txt.gz anti-conservative anti-conservative 0.59 anti-conservative 0.56 GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE97345 GSE97345_Cassette_NrdRap_diffexp.txt.gz anti-conservative anti-conservative 0.60 anti-conservative 0.59 GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE97443 GSE97443_KnockDown1_vs_Control1.all.gene.result.txt.gz anti-conservative other 0.51 NA NA NA GPL15433 Homo sapiens 9606 NA NA
GSE98082 GSE98082_E13_5_Tie2_Ino80_KO_DESeq2.csv.gz anti-conservative other 0.90 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE98084 GSE98084_All_Data_BaCl2.xlsx anti-conservative anti-conservative 0.76 NA NA NA GPL16430 Dugesia japonica 6161 NA NA
GSE98091 GSE98091_siHOTAIR-vs-siNC.diff.txt.gz anti-conservative anti-conservative 0.66 anti-conservative 0.27 GPL11154 Homo sapiens 9606 NA NA
GSE98467 GSE98467_RNA-Seq_CB15N_vs_CJW5477_expression_data.txt.gz anti-conservative anti-conservative 0.46 NA NA NA GPL21015 Caulobacter vibrioides 155892 NA NA
GSE98526 GSE98526_A12_vs_UA159T5.txt.gz anti-conservative anti-conservative 0.58 NA NA NA GPL23431 Streptococcus mutans UA159 210007 NA NA
GSE98526 GSE98526_A1_vs_UA159T5.txt.gz anti-conservative anti-conservative 0.80 NA NA NA GPL23431 Streptococcus mutans UA159 210007 NA NA
GSE98526 GSE98526_UA159T5_vs_UA159T0.txt.gz anti-conservative anti-conservative 0.93 NA NA NA GPL23431 Streptococcus mutans UA159 210007 NA NA
GSE98871 GSE98871_DESeq_Lambert_data.xlsx-sheet-siDDX5-17 vs siCTRL anti-conservative other 0.67 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE98871 GSE98871_DESeq_Lambert_data.xlsx-sheet-siDDX5-17+siREST vs siCTRL anti-conservative anti-conservative 0.55 anti-conservative 0.40 GPL16791 Homo sapiens 9606 NA NA
GSE98888 GSE98888_DESeq2data.xlsx anti-conservative other 0.97 NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE98989 GSE98989_DESeq2_infectedvsnon-infected.complete.txt.gz anti-conservative other 0.92 NA NA NA GPL23489 Glossina palpalis 7397 NA NA
GSE98989 GSE98989_edgeR_infectedvsnon-infected.complete.txt.gz anti-conservative anti-conservative 0.93 NA NA NA GPL23489 Glossina palpalis 7397 NA NA
GSE99096 GSE99096_Yang_Processed_data_Oxidative_Stress.xlsx anti-conservative anti-conservative 0.32 NA NA NA GPL23496 Lactobacillus plantarum 1590 NA NA
GSE99211 GSE99211_AnZwijsen_Solid-20180116-diffexpr-results-Group_KO.SetA_vs_Ctrl.csv.gz anti-conservative anti-conservative 0.75 anti-conservative 0.73 GPL14602 Mus musculus 10090 NA NA
GSE99211 GSE99211_AnZwijsen_Solid-20180116-diffexpr-results-Group_KO.SetB_vs_Ctrl.csv.gz anti-conservative anti-conservative 0.64 anti-conservative 0.55 GPL14602 Mus musculus 10090 NA NA
GSE99211 GSE99211_AnZwijsen_Solid-20180116-diffexpr-results-KO.SetBvsKO.SetA.csv.gz anti-conservative anti-conservative 0.77 anti-conservative 0.79 GPL14602 Mus musculus 10090 NA NA
GSE99231 GSE99231_293_DESEQ2.txt.gz anti-conservative anti-conservative 0.47 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE99231 GSE99231_293_DESEQ2.txt.gz anti-conservative anti-conservative 0.47 NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE99401 GSE99401_GEO_Bonetti_CommaDB_raw_reads.xlsx-set-0 anti-conservative other 0.46 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99401 GSE99401_GEO_Bonetti_CommaDB_raw_reads.xlsx-set-1 anti-conservative other 0.50 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99598 GSE99598_hp_rna.csv.gz anti-conservative other 0.83 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE99598 GSE99598_hp_rna.csv.gz anti-conservative other 0.83 NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE99944 GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz anti-conservative other 0.54 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE100075 GSE100075_cuffdiff_MCF7_gene_exp.txt.gz bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE100075 GSE100075_cuffdiff_MCF7_gene_exp.txt.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE100075 GSE100075_cuffdiff_SUM44_gene_exp.txt.gz bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE100075 GSE100075_cuffdiff_SUM44_gene_exp.txt.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE100421 GSE100421_E8.5vsE10.5_Cuffdiff_gene_exp.xlsx bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE100421 GSE100421_E8.5vsE10.5_Cuffdiff_gene_exp.xlsx bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE100908 GSE100908_Gene_expression_HP_vs_LP.xlsx bimodal other NA NA NA NA GPL19001 Cricetulus griseus 10029 NA NA
GSE100908 GSE100908_Gene_expression_HP_vs_LP.xlsx bimodal other NA NA NA NA GPL20904 Cricetulus griseus 10029 NA NA
GSE101232 GSE101232_LargeRNA.CD95L.50hrs.HeyA8.xlsx.gz bimodal other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE101788 GSE101788_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE101797 GSE101797_Galaxy333-Cuffdiff_gene_differential_expression_testing.txt.gz bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE101868 GSE101868_Human_Macrophages_Epithelium.txt.gz-set-1 bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE101868 GSE101868_Human_Macrophages_Epithelium.txt.gz-set-1 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE101898 GSE101898_Galaxy127-CellXtype_WT_vs_QT7L1.tabular.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE102138 GSE102138_Long_non_coding_RNA.txt.gz-set-0 bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE102142 GSE102142_FoxAaBra_gene_exp_diff.txt.gz bimodal other NA NA NA NA GPL23102 Ciona intestinalis 7719 NA NA
GSE102221 GSE102221_DESeq_yellow_uninfected_vs_yellow_infected.xlsx bimodal other NA NA NA NA GPL20640 Anguilla anguilla 7936 NA NA
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-1 bimodal other NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE102597 GSE102597_gene_exp.diff.gz bimodal other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE103670 GSE103670_gene_exp.diff.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE103747 GSE103747_All_info.txt.gz bimodal other NA NA NA NA GPL19290 Oryza sativa 4530 NA NA
GSE104420 GSE104420_CVM_cuffdiffresult.txt.gz bimodal other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE104420 GSE104420_HC_cuffdiffresult.txt.gz bimodal other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE104518 GSE104518_Combined_1d-WT_1d-SIG_7d-WT_7d-SIG.txt.gz-set-1 bimodal other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE106688 GSE106688_cuffdiff_gene_exp.diff.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE106709 GSE106709_gene_exp.diff.gz bimodal other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE107133 GSE107133_20141113_Rodriguez_Maize_MACE.txt.gz-set-1 bimodal other NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE107671 GSE107671_abundance.xlsx-set-0 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE107671 GSE107671_abundance.xlsx-set-0 bimodal other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE107849 GSE107849_Farr_Monroe_2017_Processed_Data.xlsx bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE108308 GSE108308_Process.RNASeq.DE.txt.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE108471 GSE108471_Germline_RNAseq.xlsx-sheet-diff_exp bimodal other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE108676 GSE108676_Monkey_gene_exp.diff.gz bimodal other NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE108676 GSE108676_Monkey_gene_exp.diff.gz bimodal other NA NA NA NA GPL24454 Macaca mulatta 9544 NA NA
GSE108794 GSE108794_ESC_Differentiation_RNA-Seq.xlsx-sheet-noDox vs DOX bimodal other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE108794 GSE108794_ESC_Differentiation_RNA-Seq.xlsx-sheet-noDox vs E14 bimodal other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE108844 GSE108844_4comparisons_gene_exp.diff.gz bimodal other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE109065 GSE109065_Shoot_Cuffdiff_result.txt.gz bimodal other NA NA NA NA GPL24498 Vitis riparia 96939 NA NA
GSE109111 GSE109111_WT_KD_DESeq_analysis_Result_Table.txt.gz bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE109322 GSE109322_gene_exp.diff.gz bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE109461 GSE109461_expression_data.txt.gz bimodal other NA NA NA NA GPL24527 Tetraselmis suecica 270643 NA NA
GSE109582 GSE109582_cuffdiff_101817_gene_exp.csv.gz bimodal other NA NA NA NA GPL21548 Cryptococcus neoformans var. grubii H99 235443 NA NA
GSE109615 GSE109615_gene_description.txt.gz-set-2 bimodal other NA NA NA NA GPL24537 Cucumis sativus 3659 NA NA
GSE109806 GSE109806_MockFHVvsRaltFHV_gene_exp.diff.gz bimodal other NA NA NA NA GPL24552 Felis catus 9685 NA NA
GSE109850 GSE109850_DifferentialAnalysis.txt.gz bimodal other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE110073 GSE110073_DESeq_Trub_CO_vs_CBS.csv.gz bimodal other NA bimodal NA GPL10999 Homo sapiens 9606 NA NA
GSE110073 GSE110073_DESeq_Trub_CO_vs_CBS.csv.gz bimodal other NA bimodal NA GPL11154 Homo sapiens 9606 NA NA
GSE110073 GSE110073_DESeq_Trub_CO_vs_CBS.csv.gz bimodal other NA bimodal NA GPL23937 Trichophyton rubrum 5551 NA NA
GSE110073 GSE110073_DESeq_Trub_CO_vs_CBS.csv.gz bimodal other NA bimodal NA GPL24576 Trichophyton rubrum 5551 NA NA
GSE110073 GSE110073_DESeq_hg19_CO_vs_H.csv.gz bimodal other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE110073 GSE110073_DESeq_hg19_CO_vs_H.csv.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE110073 GSE110073_DESeq_hg19_CO_vs_H.csv.gz bimodal other NA NA NA NA GPL23937 Trichophyton rubrum 5551 NA NA
GSE110073 GSE110073_DESeq_hg19_CO_vs_H.csv.gz bimodal other NA NA NA NA GPL24576 Trichophyton rubrum 5551 NA NA
GSE111221 GSE111221_BBCdiffGE.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE113485 GSE113485_RWPE1_EMPTY_ERG_ERGshELF1.diff.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE115102 GSE115102_RNAseq_p53KO_vs_p53CryKO_UV_CuffDiff.xlsx-sheet-p53_KO bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115102 GSE115102_RNAseq_p53KO_vs_p53CryKO_UV_CuffDiff.xlsx-sheet-p53_Cry_TKO bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD28_v_PD30.batch3.novel.gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115554 GSE115554_RNAseq_Genediff_pilot.xlsx bimodal other NA NA NA NA GPL19580 Arabidopsis thaliana 3702 NA NA
GSE116610 GSE116610_gene_expression_level.xlsx-sheet-wt vs hsp90 hsrw66 bimodal other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE116610 GSE116610_gene_expression_level.xlsx-sheet-hsrw66 vs hsp90 hsrw66 bimodal other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE116610 GSE116610_gene_expression_level.xlsx-sheet-hsp90 hsrw66 vs hsp90 bimodal other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE117032 GSE117032_H33BKI_WT_ESC_vs_NPC_gene_exp_diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE117032 GSE117032_H33BKI_WT_NPC_vs_FIDC4_NPC_gene_exp_diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE117032 GSE117032_H33BKI_WT_NPC_vs_FIDD8_NPC_gene_exp_diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE117229 GSE117229_Galaxy247-_Cuffdiff_on_data_212__data_203_and_others_gene_differential_expression_testing.txt.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE117632 GSE117632_Normoxia_ALKBH1_Knockdown_RNAseq_Processed.xlsx.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE117632 GSE117632_Normoxia_ALKBH1_Knockdown_RNAseq_Processed.xlsx.gz bimodal other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE118371 GSE118371_gene_exp_ColxCol_endosperm_ColxCvi_endosperm.txt.gz bimodal other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE119029 GSE119029_gene_exp.diff.gz bimodal other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE119046 GSE119046_rpoS92_vs_wtrpoS.csv.gz bimodal other NA NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE120241 GSE120241_gene_description.txt.gz-set-0 bimodal other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE120241 GSE120241_gene_description.txt.gz-set-2 bimodal other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE120241 GSE120241_gene_description.txt.gz-set-3 bimodal other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE120241 GSE120241_gene_description.txt.gz-set-4 bimodal other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE120241 GSE120241_gene_description.txt.gz-set-5 bimodal other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE122679 GSE122679_cufflinks_HNPC_v_GBM_comparison.xlsx bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE123400 GSE123400_Vg6_differentially_expression.csv.gz bimodal other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE123554 GSE123554_payelg_WT_HNS_gene_exp_Final.xlsx-sheet-Sheet1 bimodal other NA NA NA NA GPL18133 Escherichia coli 562 NA NA
GSE123656 GSE123656_Processed_data_file_Sanchez-Montesino_et_al_2018_.xlsx bimodal other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE29992 GSE29992_Het1_KO2_expr.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE33265 GSE33265_gene_exp.diff.gz bimodal other NA NA NA NA GPL9316 Oryza sativa 4530 NA NA
GSE33265 GSE33265_isoform_exp.diff.gz bimodal other NA NA NA NA GPL9316 Oryza sativa 4530 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-1 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-2 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-5 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36005 GSE36005_sus_gene.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36695 GSE36695_H1KSR_H1SFM.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1KSR_H1SFM.txt.gz bimodal other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9KSR_H9SFM.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9KSR_H9SFM.txt.gz bimodal other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36710 GSE36710_RBFOX1_Transcriptional_Events.txt.gz bimodal other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_cds_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_cds_exp.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_cds.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_cds.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_gene_exp.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_isoform_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_isoform_exp.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_promoters.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_promoters.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_splicing.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_splicing.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_tss_group_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_tss_group_exp.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_cds_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_cds_exp.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_cds.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_cds.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_gene_exp.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_isoform_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_isoform_exp.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_promoters.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_promoters.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_tss_group_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_tss_group_exp.diff.gz bimodal other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE39652 GSE39652_20111201c2Day3_gene_exp.txt.gz bimodal other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2Day3_gene_exp.txt.gz bimodal other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE39812 GSE39812_TB_result_transcript_summary.tsv.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40218 GSE40218_processed_DESeq.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE40218 GSE40218_processed_DESeq.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40948 GSE40948_MEF_vs_ESC_2replicates_expression.tsv.gz bimodal other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE40948 GSE40948_MEF_vs_ESC_2replicates_expression.tsv.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42381 GSE42381_gene_exp.diff.gz bimodal other NA NA NA NA GPL16295 Rhodococcus opacus 37919 NA NA
GSE42805 GSE42805_cds.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_isoform_exp.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_promoters.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_splicing.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_tss_group_exp.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-0 bimodal other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-2 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-2 bimodal other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43431 GSE43431_mRNA_STHdh_CUFF_gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE43660 GSE43660_control_vs_IL4_1hr.txt.gz bimodal other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE43660 GSE43660_control_vs_IL4_4hr.txt.gz bimodal other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE43660 GSE43660_control_vs_il33_1hr.txt.gz bimodal other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE43660 GSE43660_control_vs_il33_4hr.txt.gz bimodal other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE44333 GSE44333_d33_mock_vs_mhv_res_noNA.txt.gz bimodal other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE44536 GSE44536_GEO_Processed_file_excel.xlsx.gz-sheet-FPKM_NC_009338 bimodal other NA NA NA NA GPL16708 Mycolicibacterium gilvum PYR-GCK 350054 NA NA
GSE44846 GSE44846_O157_genome_total.xlsx.gz-sheet-Sheet1 bimodal other NA NA NA NA GPL16748 Escherichia coli O157:H7 83334 NA NA
GSE46066 GSE46066_ICRFVsDMSO.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_fullSet bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_400M bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_300M bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_200M bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_150M bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_100M bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round1 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round2 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round3 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round4 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round5 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round6 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round7 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round8 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round9 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_100M.xls.gz-sheet-adipose_100M_round10 bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-1 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE47095 GSE47095_splicing_diff.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-Epi_gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-Epi_isoform_exp.diff.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-A_vs_B_isoform_exp_diff bimodal other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-A_vs_C_isoform_exp_diff bimodal other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-A_vs_D_isoform_exp_diff bimodal other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-A_vs_E_isoform_exp_diff bimodal other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-B_vs_C_isoform_exp_diff bimodal other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-C_vs_E_isoform_exp_diff bimodal other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-0 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-1 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-1 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-2 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-2 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-3 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-3 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-5 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-5 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-6 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-6 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-7 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-7 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-8 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-8 bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE50068 GSE50068_Cuffdiff_output.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 bimodal other NA NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 bimodal other NA NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE51975 GSE51975_C_v_OVOL1_2_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE51975 GSE51975_C_v_OVOL1_2_isoform_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE51975 GSE51975_C_v_OVOL1_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE51975 GSE51975_C_v_OVOL1_isoform_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE51975 GSE51975_C_v_OVOL2_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE51975 GSE51975_C_v_OVOL2_isoform_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE52038 GSE52038_Supplementary-table-1-date11021.txt.gz bimodal other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE52080 GSE52080_processed_data.txt.gz bimodal other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE52153 GSE52153_wtDMSOvsczt-1DMSO.txt.gz bimodal other NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE52284 GSE52284_gene_exp.diff.gz bimodal other NA NA NA NA GPL15167 Schizosaccharomyces pombe 4896 NA NA
GSE53040 GSE53040_wtDMSOvswtD1.txt.gz bimodal other NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE53040 GSE53040_wtDMSOvswtTX34.txt.gz bimodal other NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE54240 GSE54240_phoP_RNA-seq.tsv.gz bimodal other NA NA NA NA GPL17280 Mycobacterium tuberculosis H37Rv 83332 NA NA
GSE54246 GSE54246_Control_vs._4_NQO_Tongue_gene_exp.xlsx.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54286 GSE54286_Lys_sup_pelle_rs_mvhip_Exp.txt.gz bimodal other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE54473 GSE54473_Suv420_gene_exp.xlsx.gz-sheet-gene_exp bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54473 GSE54473_Suv420_gene_exp.xlsx.gz-sheet-gene_exp bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-0 bimodal other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C1_WtE8.0_Vs_Wt10.0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C2_Wt_VS_ Tc E8.0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C3_Wt_VS_Tc_E10.0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C4_TcE8.0_VS_TcE10.0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-ESCs_VS_EBDay4 bimodal other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-ESCs_VS_EBDay4 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-EBDay4_ControlVSBrachyuryKD bimodal other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-EBDay4_ControlVSBrachyuryKD bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55090 GSE55090_cds_exp.diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55090 GSE55090_gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55090 GSE55090_isoform_exp.diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55090 GSE55090_tss_group_exp.diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE56284 GSE56284_gene_exp.txt.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE58053 GSE58053_1mm-over-0mm.txt.gz bimodal conservative NA NA NA NA GPL18739 Nitrobacter winogradskyi 913 NA NA
GSE58082 GSE58082_gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE58115 GSE58115_4858DM98-3_VS_4858C6_differential_all.txt.gz bimodal other NA NA NA NA GPL18744 Streptomyces hygroscopicus subsp. jinggangensis 5008 1133850 NA NA
GSE58326 GSE58326_gene_exp.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE58359 GSE58359_HOXA9.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58379 GSE58379_RBM47_alternative_splicing.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE58405 GSE58405_isoform_exp.diff.gz bimodal other NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE58405 GSE58405_gene_exp.diff.gz bimodal other NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE58467 GSE58467_FPKM.txt.gz bimodal other NA NA NA NA GPL18799 Enterococcus faecalis 1351 NA NA
GSE58910 GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59481 GSE59481_PIG_vs_GFP_DE_genes.txt.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE59781 GSE59781_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59850 GSE59850_redgrn_early_cuffdiff_out.diff.txt.gz bimodal other NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE59850 GSE59850_redgrn_late_cuffdiff_out.diff.txt.gz bimodal conservative NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE59850 GSE59850_redrho_late_cuffdiff_out.diff.txt.gz bimodal other NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE59850 GSE59850_redvio_late_cuffdiff_out.diff.txt.gz bimodal other NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE59954 GSE59954_gene_expression.txt.gz bimodal other NA NA NA NA GPL17033 Trypanosoma brucei 5691 NA NA
GSE60441 GSE60441_gene_exp.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60630 GSE60630_PDC3_vs_DMSO_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60630 GSE60630_PDC3_vs_DMSO_isoform_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60641 GSE60641_AB03_2.xlsx.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60642 GSE60642_AB056_2.xlsx.gz-set-0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60642 GSE60642_AB056_2.xlsx.gz-set-1 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60642 GSE60642_AB056_2.xlsx.gz-set-2 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60691 GSE60691_processed_data_aso_wild_type.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60691 GSE60691_processed_data_krkr_sumo_mut.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60701 GSE60701_AL_R_vs_AL_L.diff_expressed_transcripts.tsv.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60701 GSE60701_ChL_R_vs_AL_R.diff_expressed_transcripts.tsv.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60701 GSE60701_ChL_R_vs_ChL_L.diff_expressed_transcripts.tsv.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61031 GSE61031_DE_polyaWT_vs_polyaKO.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61033 GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61033 GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61336 GSE61336_results_167_vs_WTZ.txt.gz bimodal other NA NA NA NA GPL19185 Burkholderia cenocepacia 95486 NA NA
GSE61336 GSE61336_results_167_vs_WTL.txt.gz bimodal other NA NA NA NA GPL19185 Burkholderia cenocepacia 95486 NA NA
GSE61351 GSE61351_Cont_ComparedTo_PTH_D28_CuffDiffAnalysis1.xls.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61566 GSE61566_cds_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61566 GSE61566_gene_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61566 GSE61566_isoform_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61566 GSE61566_tss_group_exp.diff.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61690 GSE61690_DormantvsNondormant_meristems.txt.gz bimodal other NA NA NA NA GPL13899 Solanum tuberosum 4113 NA NA
GSE61851 GSE61851_genelist-sortedbypadj.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61955 GSE61955_12hr.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61955 GSE61955_6hr.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S4 bimodal other NA NA NA NA GPL15432 Oryza sativa 4530 NA NA
GSE62760 GSE62760_Acute_Cuffdiff_DGE.txt.gz bimodal other NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE62760 GSE62760_Chronic_Cuffdiff_DGE.txt.gz bimodal other NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE62909 GSE62909_Differential_gene_exp.diff.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE63707 GSE63707_DEXSeqResults_IFMWT_03d_vs_jump_0d.txt.gz bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE63707 GSE63707_DEXSeqResults_IFMWT_03d_vs_leg_0d.txt.gz bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE63750 GSE63750_chemhigh-batch-result-using-R-DeSeq.csv.gz bimodal other NA other NA GPL19476 Staphylococcus aureus 1280 NA NA
GSE63750 GSE63750_chemhigh-batch-result-using-R-DeSeq.csv.gz bimodal other NA other NA GPL20613 Staphylococcus aureus 1280 NA NA
GSE63758 GSE63758_gene_exp.diff.gz bimodal other NA NA NA NA GPL15907 Mus musculus 10090 NA NA
GSE63836 GSE63836_Dx_versus_C15Dx.DESeq.txt.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE64080 GSE64080_miR-93_CuffDiff.xls.gz-sheet-diffExpResults-set-0 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE64080 GSE64080_miR-93_CuffDiff.xls.gz-sheet-diffExpResults-set-1 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE65022 GSE65022_cuffdiff-WT_CD_gene_exp.diff.gz bimodal other NA NA NA NA GPL19657 Oryza sativa Japonica Group 39947 NA NA
GSE65024 GSE65024_WT-bhlh_gene_exp.diff.gz bimodal other NA NA NA NA GPL19657 Oryza sativa Japonica Group 39947 NA NA
GSE65142 GSE65142_HYBP.txt.gz bimodal other NA NA NA NA GPL19675 Raphanus sativus 3726 NA NA
GSE65142 GSE65142_YH.txt.gz bimodal other NA NA NA NA GPL19675 Raphanus sativus 3726 NA NA
GSE65321 GSE65321_RNASeqProcessedDESeqData.txt.gz bimodal other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE65542 GSE65542_pnky_kd.diff.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE65542 GSE65542_ptbp1_kd.diff.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE65697 GSE65697_RNA-seq.csv.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE65994 GSE65994_gene_exp.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66158 GSE66158_all_genes_FPKM.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66478 GSE66478_gene_exp.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66506 GSE66506_DE_analysis_010714.xlsx-sheet-All_Genes bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66619 GSE66619_DRG_Con_vs_Ips_mrna_gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66619 GSE66619_Dorsal_Cord_Ipsi_vs_Con_mrna_gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66652 GSE66652_AS13-C_differential_expression.txt.gz bimodal other NA NA NA NA GPL19862 Rhizoctonia solani AG-3 Rhs1AP 1086054 NA NA
GSE66652 GSE66652_S4-C_differential_expression.txt.gz bimodal other NA NA NA NA GPL19862 Rhizoctonia solani AG-3 Rhs1AP 1086054 NA NA
GSE67029 GSE67029_cuffdiff_mh_h8.txt.gz bimodal other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE67063 GSE67063_gene_exp.diff.gz bimodal other NA NA NA NA GPL18769 Chlorocebus sabaeus 60711 NA NA
GSE67554 GSE67554_TAG5_Cuffdiff_gene_differential_expression_testing.txt.gz bimodal other NA NA NA NA GPL19989 Eucalyptus grandis 71139 NA NA
GSE67554 GSE67554_ZG14_Cuffdiff_gene_differential_expression_testing.txt.gz bimodal other NA NA NA NA GPL19989 Eucalyptus grandis 71139 NA NA
GSE67674 GSE67674_RNA-seq_analysis_AADMSOvsAAGSK-J4.txt.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE67954 GSE67954_CSR1_RNAi_DESeq_output.txt.gz bimodal other NA other NA GPL18245 Caenorhabditis elegans 6239 NA NA
GSE68160 GSE68160_GRdim-RNASeq.xlsx bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68360 GSE68360_cds.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68360 GSE68360_cds_exp.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68360 GSE68360_isoform_exp.diff.gz bimodal conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68360 GSE68360_promoters.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68360 GSE68360_splicing.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68470 GSE68470_xue_etal_edgeR.txt.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE69556 GSE69556_cds_exp.diff.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE69721 GSE69721_UP-_and_Down-regulated_genes.txt.gz bimodal other NA NA NA NA GPL19942 Haemaphysalis flava 181088 NA NA
GSE69900 GSE69900_control-CBD16H.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE69900 GSE69900_control-tamoxifen48H.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70283 GSE70283_cuffdiff_gene_exp.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70314 GSE70314_Gal474_cuffdiff_sictrl.1_siAtad2.1_gene_differential_expression_testing.txt.gz bimodal other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE70314 GSE70314_Gal476_cuffdiff_sictrl.1_siAtad2.1_transcript_differential_expression_testing.txt.gz bimodal other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE70314 GSE70314_Gal485_cuffdiff_sictrl.2_siAtad2.2_gene_differential_expression_testing.txt.gz bimodal other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE70314 GSE70314_Gal487_cuffdiff_sictrl.2_siAtad2.2_transcript_differential_expression_testing.txt.gz bimodal other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE70584 GSE70584_Liberman2015_sorted_CUFFLINKS_gene_exp.txt.gz bimodal other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE70766 GSE70766_Differential_expression.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70766 GSE70766_Differential_expression.txt.gz bimodal other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE70815 GSE70815_gene_exp.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71164 GSE71164_SCR-static_vs_SCR-FSS.tabular.txt.gz bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE71252 GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-geneExpDiffData bimodal other NA NA NA NA GPL17143 Saccharomyces cerevisiae 4932 NA NA
GSE71252 GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-isoformExpDiffData bimodal other NA NA NA NA GPL17143 Saccharomyces cerevisiae 4932 NA NA
GSE71369 GSE71369_Processed_data_GRO_seq.xlsx-sheet-untethered_vs_tethered_RPM bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE71369 GSE71369_Processed_data_GRO_seq.xlsx-sheet-untethered_vs_tethered_RPM bimodal other NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-0 bimodal other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-3 bimodal other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-4 bimodal other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71943 GSE71943_KO_vs_WT_diffGenes.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72105 GSE72105_Differential_Gene_Expression_Summary_D0.txt.gz bimodal conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72105 GSE72105_Differential_Gene_Expression_Summary_D6.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72172 GSE72172_S2_vs_SIN3_187.txt.gz bimodal other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE72341 GSE72341_DEseq_results.xlsx bimodal other NA spiky NA GPL9185 Mus musculus 10090 NA NA
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_HEAT_gene_exp.diff.gz bimodal other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_SALT_HEAT_gene_exp.diff.gz bimodal other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE72830 GSE72830_gene_exp.diff.gz bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE72860 GSE72860_RRBS_CpG_methylation_call.txt.gz bimodal other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE72860 GSE72860_RRBS_CpG_methylation_call.txt.gz bimodal other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE73082 GSE73082_F_Sp5_PlusversusMinusDOX_ProcessedFiles.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73083 GSE73083_3F_Lef1_PlusversusMinusDOX_ProcessedFiles.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73192 GSE73192_cds_chromosome_exp.diff.gz bimodal other NA NA NA NA GPL20934 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 99287 NA NA
GSE73972 GSE73972_atxvsWT_gene_exp_diff.txt.gz bimodal other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-3 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-4 bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74381 GSE74381_gene_exp_control2vsZeb2cKO2diff.xlsx bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74886 GSE74886_processedFPKMS.xlsx bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75640 GSE75640_HR1_vs_control_1_gene_exp.diff.gz bimodal other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE75738 GSE75738_Prof.Wu_group2-1.xlsx-sheet-PGC.vs.FGSC bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75738 GSE75738_Prof.Wu_group2-1.xlsx-sheet-PGC.vs.GV Oocyte bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75738 GSE75738_Prof.Wu_group2-1.xlsx-sheet-FGSC.vs.GV Oocyte bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75738 GSE75738_Prof.Wu_group2-1.xlsx-sheet-PGC.vs.MII Oocyte bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75738 GSE75738_Prof.Wu_group2-1.xlsx-sheet-FGSC.vs.MII Oocyte bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75738 GSE75738_Prof.Wu_group2-1.xlsx-sheet-GV Oocyte.vs.MII Oocyte bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75787 GSE75787_gene_exp.diff.txt.gz bimodal conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_down bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_down bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75878 GSE75878_cds.diff.gz bimodal other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE76257 GSE76257_O-VG_OGS2.csv.gz bimodal other NA NA NA NA GPL21271 Nasonia vitripennis 7425 NA NA
GSE76287 GSE76287_seedling_col0vdko_tair.txt.gz bimodal other NA NA NA NA GPL19080 Arabidopsis thaliana 3702 NA NA
GSE76304 GSE76304_gene_exp.diff.gz bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE76487 GSE76487_shMBNL1_gene_exp_diff.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76868 GSE76868_Table_S1_RNA-seq.xlsx bimodal other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE76992 GSE76992_GFP_vs_p16.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76994 GSE76994_TKD_H2O_DEseq.xls.gz bimodal other NA NA NA NA GPL21248 Xenopus laevis 8355 NA NA
GSE77037 GSE77037_gene_exp.diff.gz bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE77113 GSE77113_WT_non-GC_vs_GC.diff.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77218 GSE77218_A3_A2.xlsx-sheet-express bimodal other NA NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE77218 GSE77218_A4_A2.xlsx-sheet-express bimodal other NA NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE77218 GSE77218_A4_A3.xlsx-sheet-express bimodal other NA NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE77256 GSE77256_Cuffdiff_Anagen_HFSCs.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77256 GSE77256_Cuffdiff_all_HFSCs.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77395 GSE77395_col_air_vs_ethylene.diff.gz bimodal other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE77398 GSE77398_ribo_cuffdiff_genes.xls.gz bimodal other NA NA NA NA GPL21078 Plasmodium falciparum 5833 NA NA
GSE77675 GSE77675_Old_vs_Young_isoforms_expression.txt.gz bimodal other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE77901 GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE78506 GSE78506_dmso_vs_ca_24Hour_geneExp.diff.gz bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78834 GSE78834_gene_expression_profiles.txt.gz bimodal other NA NA NA NA GPL21550 Desulfovibrio vulgaris 881 NA NA
GSE78878 GSE78878_30Cvs30P_score.txt.gz bimodal other NA NA NA NA GPL15716 Caenorhabditis elegans 6239 NA NA
GSE78878 GSE78878_30CvsN2C_score.txt.gz bimodal other NA NA NA NA GPL15716 Caenorhabditis elegans 6239 NA NA
GSE78878 GSE78878_30PvsN2P_score.txt.gz bimodal other NA NA NA NA GPL15716 Caenorhabditis elegans 6239 NA NA
GSE78996 GSE78996_CTR_vs_EAE_Cuffdiff_analysis.xlsx bimodal other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-gene_exp bimodal other NA NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-C2vWT-2hr genes bimodal other NA NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-gene_exp bimodal other NA NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-3hr_RNA-Seq.xlsx bimodal other NA NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE79416 GSE79416_new-lncRNA_transcript_output.xls.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE79507 GSE79507_minipig.txt.gz bimodal other NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE79822 GSE79822_Deseq_totalRNA.txt.gz bimodal other NA anti-conservative 0.46 GPL13657 Caenorhabditis elegans 6239 NA NA
GSE80128 GSE80128_P035_DESeq_KO-WT_pathway.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE80237 GSE80237_Supplementary_Data_1.txt.gz bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE80718 GSE80718_gene_exp.diff.gz bimodal other NA NA NA NA GPL21781 Linum usitatissimum 4006 NA NA
GSE81100 GSE81100_youngARSER_output.txt.gz bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE81100 GSE81100_old_ARSER_output.txt.gz bimodal other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE81493 GSE81493_Differential_gene_expression_analysis.diff.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE81593 GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE81593 GSE81593_2.Mcf10A_Vec_and_Hras.xlsx bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE81834 GSE81834_489_614_Schizont_Cuffdiff.xlsx.gz-sheet-Transcript Diff. Expression bimodal other NA NA NA NA GPL21940 Plasmodium yoelii 5861 NA NA
GSE81865 GSE81865_RNAseq_uninjured-14dpi.txt.gz bimodal other NA NA NA NA GPL21741 Danio rerio 7955 NA NA
GSE83717 GSE83717_FPKMs_pvalue_matrices.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE83819 GSE83819_gene_exp.diff.gz bimodal other NA NA NA NA GPL21090 Aspergillus niger 5061 NA NA
GSE83827 GSE83827_WT_vs_tf5.xlsx-sheet-gene_exp_diff bimodal other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE83828 GSE83828_Gene_expression_data.xlsx bimodal other NA NA NA NA GPL22093 Cyanidioschyzon merolae 45157 NA NA
GSE83887 GSE83887_gene_exp_Hyl-2_vs_Hyl-2-G.diff.gz bimodal other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE83887 GSE83887_gene_exp_N2_vs_Hyl-2.diff.gz bimodal other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE83887 GSE83887_gene_exp_N2_vs_N2G.diff.gz bimodal other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE84145 GSE84145_E12.5RET_WT_NULL.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84158 GSE84158_gene_exp.diff.gz bimodal other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84160 GSE84160_WT_vs_Med1KO_gene_exp.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_15-20_mm bimodal other NA NA NA NA GPL22164 Postia placenta 104341 NA NA
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_30-35_mm bimodal other NA NA NA NA GPL22164 Postia placenta 104341 NA NA
GSE84606 GSE84606_gene_exp.diff.gz bimodal other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE85321 GSE85321_Supplemental_Table_2_YAD_RNA_seq_.xls.gz-sheet-YAD_Diff analysis bimodal other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE85321 GSE85321_Supplemental_Table_3_YGD_RNA_seq_.xls.gz-sheet-YGD_Diff analysis bimodal other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE85321 GSE85321_Supplemental_Table_5_YAR_RNA_seq_.xls.gz-sheet-YAR diff. analysis bimodal other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE85328 GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz bimodal other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE85643 GSE85643_gene_exp.diff.txt.gz bimodal other NA NA NA NA GPL17644 Anopheles gambiae 7165 NA NA
GSE85643 GSE85643_isoform_exp.diff.txt.gz bimodal other NA NA NA NA GPL17644 Anopheles gambiae 7165 NA NA
GSE85653 GSE85653_gene_exp.diff.gz bimodal other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE85883 GSE85883_C_DL_expression.diff.xlsx-sheet-gene_exp bimodal other NA NA NA NA GPL21179 Arabidopsis thaliana 3702 NA NA
GSE85883 GSE85883_M_DL_expression.diff.xlsx-sheet-gene_exp bimodal other NA NA NA NA GPL21179 Arabidopsis thaliana 3702 NA NA
GSE86187 GSE86187_p0wt-ko-gene_exp.diff.gz bimodal other NA NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE86187 GSE86187_p6wt-ko_gene_exp.diff.gz bimodal other NA NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE86248 GSE86248_shControl-vs-shPaf1-gene_exp.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE86248 GSE86248_shControl-vs-shPhf5a-gene_exp_1_.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE86521 GSE86521_DESeq_out_KO_vs_WT.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE86950 GSE86950_cuffdiff_WGS7_ATCC55737.xlsx bimodal other NA NA NA NA GPL22433 Acidipropionibacterium acidipropionici 1748 NA NA
GSE87307 GSE87307_mRNA_processed_results.xlsx bimodal other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE87315 GSE87315_CuffDiff_RNA-seq.csv.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87441 GSE87441_gene_exp_CTRL_HDAC2-KD_statistics.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87441 GSE87441_gene_exp_CTRL_SP3-KD_statistics.txt.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87532 GSE87532_gene_exp.diff.name.txt.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE87824 GSE87824_processed_data.xlsx bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-0 bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-1 bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-2 bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-3 bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE89165 GSE89165_expression_table.txt.gz bimodal other NA NA NA NA GPL22604 Xenopus tropicalis 8364 NA NA
GSE89504 GSE89504_TSS_groups_exp.tabular.txt.gz bimodal other NA NA NA NA GPL22492 Acinetobacter baumannii ATCC 17978 400667 NA NA
GSE89504 GSE89504_gene_exp.tabular.txt.gz bimodal other NA NA NA NA GPL22492 Acinetobacter baumannii ATCC 17978 400667 NA NA
GSE90921 GSE90921_deseq_res.txt.gz bimodal other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE91060 GSE91060_E11_vs._E16.xls.gz bimodal other NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE91060 GSE91060_E11_vs._P1.xlsx bimodal other NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
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GSE94120 GSE94120_U2OS-PcTF_rel_abundance_1x3.txt.gz bimodal other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
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GSE97129 GSE97129_Mip40_vs_WT_CuffDiff_Output_BDGP5.txt.gz bimodal other NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
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GSE97623 GSE97623_Prepub_vs_Pub.Differential_analysis_results.txt.gz bimodal other NA NA NA NA GPL22396 Rattus norvegicus 10116 NA NA
GSE97738 GSE97738_hypothalamic_DEG.xls.gz-sheet-origin bimodal other NA NA NA NA GPL22475 Sus scrofa 9823 NA NA
GSE97792 GSE97792_W5_panW5.txt.gz bimodal other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE98045 GSE98045_genes_differential_exp.txt.gz bimodal other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE98219 GSE98219_PAS_seq_all_gene_expression.xlsx-sheet-all_gene_list bimodal other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
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GSE98258 GSE98258_annotated_diffana_exp++_p100++-p30++.txt.gz bimodal other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
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GSE98258 GSE98258_annotated_diffana_exp+-_p100+–p30+-.xlsx bimodal other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE98739 GSE98739_Q111SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE98739 GSE98739_Q7SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE98739 GSE98739_Q7SST_vs_Q111SST_DEGs_with_fpkm.diff.gz bimodal other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99263 GSE99263_RNA-seq_RPKM_HCT-116_siAPC_vs_untreated_cuffDiff.txt.gz bimodal other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE99304 GSE99304_U2OSSGcuffdiff.txt.gz bimodal other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE99304 GSE99304_U2OSSGcuffdiff.txt.gz bimodal other NA NA NA NA GPL19756 Saccharomyces cerevisiae 4932 NA NA
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GSE100092 GSE100092_cds.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE100092 GSE100092_cds_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE100092 GSE100092_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE100092 GSE100092_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE100092 GSE100092_promoters.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE100092 GSE100092_splicing.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE100092 GSE100092_tss_group_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE100277 GSE100277_Mett3_gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE100332 GSE100332_Input_Mett3gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE100421 GSE100421_WTvsOE_Cuffdiff_gene_exp.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE100421 GSE100421_WTvsOE_Cuffdiff_gene_exp.xlsx conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE100484 GSE100484_HL-60_Parental_vs_JMJD3_KO.diff.exp.xls.gz conservative other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE100632 GSE100632_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE100908 GSE100908_Gene_expression_SHP_vs_SLP.xlsx conservative other NA NA NA NA GPL19001 Cricetulus griseus 10029 NA NA
GSE100908 GSE100908_Gene_expression_SHP_vs_SLP.xlsx conservative other NA NA NA NA GPL20904 Cricetulus griseus 10029 NA NA
GSE100954 GSE100954_WTvs3aKO_gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE100954 GSE100954_WTvsDKO13_gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE100954 GSE100954_WTvsTet1KO_gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE101510 GSE101510_IRF4_master_table.csv.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
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GSE101545 GSE101545_DiffExpr_diet_sw1_versus_control_Ssal_ref.xlsx conservative other NA NA NA NA GPL23792 Salmo salar 8030 NA NA
GSE101545 GSE101545_DiffExpr_diet_sw2_versus_control.xlsx conservative other NA NA NA NA GPL23792 Salmo salar 8030 NA NA
GSE101545 GSE101545_DiffExpr_diet_sw2_versus_control_Ssal_ref.xlsx conservative other NA NA NA NA GPL23792 Salmo salar 8030 NA NA
GSE101605 GSE101605_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL16790 Mus musculus 10090 NA NA
GSE101664 GSE101664_Darz2r_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE101664 GSE101664_Darz2r_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13311 Drosophila mojavensis 7230 NA NA
GSE101664 GSE101664_Darz2r_gene_exp.diff.gz conservative conservative NA NA NA NA GPL23809 Drosophila arizonae 7263 NA NA
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GSE101664 GSE101664_Dmoj2r_gene_exp.diff.gz conservative conservative NA NA NA NA GPL23809 Drosophila arizonae 7263 NA NA
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GSE101833 GSE101833_ETS1_gene_exp_all.txt.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
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GSE101868 GSE101868_Human_Macrophages_Epithelium.txt.gz-set-0 conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE102138 GSE102138_Protein_Coding_Genes.txt.gz-set-0 conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE102138 GSE102138_Protein_Coding_Genes.txt.gz-set-1 conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE102138 GSE102138_Protein_Coding_Genes.txt.gz-set-2 conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE102141 GSE102141_CYTB_gene_exp_diff.txt.gz conservative conservative NA NA NA NA GPL23102 Ciona intestinalis 7719 NA NA
GSE102221 GSE102221_DESeq_silver_uninfected_vs_silver_infected.xlsx conservative other NA NA NA NA GPL20640 Anguilla anguilla 7936 NA NA
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GSE102231 GSE102231_STreghi_vs_ITreghi.gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE102231 GSE102231_STreghi_vs_STreglo.gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE102231 GSE102231_STreglo_vs_ITreglo.gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE102231 GSE102231_STregs_vs_ITreghi.gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE102231 GSE102231_STregs_vs_ITreglo.gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE102421 GSE102421_isoform_exp.diff.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE102421 GSE102421_isoform_exp.diff.xlsx conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE102546 GSE102546_cuffdiff.gene_exp.diff.gz conservative other NA NA NA NA GPL20084 Rattus norvegicus 10116 NA NA
GSE102606 GSE102606_tail_siblings_mutants.txt.gz conservative other NA NA NA NA GPL20828 Danio rerio 7955 NA NA
GSE102780 GSE102780_SmallRNA.CD95L.50hrs.HeyA8.xlsx conservative other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE102987 GSE102987_klph_ko_wt_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE103167 GSE103167_rat_gene_exp_diff_ensemble_anno.xlsx-sheet-Sheet1 conservative conservative NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE103207 GSE103207_ALV_J36h_vs_NC36h.Differential_analysis_results.xlsx-sheet-Sheet1 conservative other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE103207 GSE103207_ALV_J3h_vs_NC3h.Differential_analysis_results.xlsx-sheet-Sheet1 conservative other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE103742 GSE103742_CUFFDIFF_PLZF_SFD.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE103914 GSE103914_ZLD_differential_gene_expression.csv.gz conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE103923 GSE103923_Unstr_DE_All_WT_vs_MUT_NormCounts.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE103949 GSE103949_Liver-RNASeq.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE103999 GSE103999_mStromal_WTvHet_gene_exp.diff.gz conservative conservative NA NA NA NA GPL16417 Mus musculus 10090 NA NA
GSE104090 GSE104090_Isoform_processed_data.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE104090 GSE104090_Processed_data.xlsx-sheet-gene_exp.diff conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE104286 GSE104286_Gene_differential_expression.xlsx conservative other NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE104290 GSE104290_gene_exp.diff.gz conservative other NA NA NA NA GPL24049 Mus musculus 10090 NA NA
GSE104336 GSE104336_nm-vs-hf_rna-seq_raw_data_Fall_2016.csv.gz conservative conservative NA NA NA NA GPL19132 Drosophila melanogaster 7227 NA NA
GSE104336 GSE104336_nm-vs-hs_rna-seq_raw_data_Fall_2016.csv.gz conservative conservative NA NA NA NA GPL19132 Drosophila melanogaster 7227 NA NA
GSE104422 GSE104422_C_OA_Cuffdiff.txt.gz conservative other NA NA NA NA GPL24063 Drosophila sechellia 7238 NA NA
GSE104518 GSE104518_Combined_1d-WT_1d-SIG_7d-WT_7d-SIG.txt.gz-set-0 conservative other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE104527 GSE104527_CCD11_vs_Control_gene_differential_expression.xlsx conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
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GSE105788 GSE105788_WBvsNW_AP_isoform.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE105789 GSE105789_F4-80negvsCD301bMphage_isoform.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE106259 GSE106259_gene_exp.txt.gz conservative other NA NA NA NA GPL16417 Mus musculus 10090 NA NA
GSE106365 GSE106365_S2.L7vsControl.Differential_analysis_results.txt.gz conservative other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE106440 GSE106440_gene_exp.diff.gz conservative other NA NA NA NA GPL19778 Ovis aries 9940 NA NA
GSE106445 GSE106445_gene_exp.diff.xlsx conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE106467 GSE106467_Isl-4R_vs_Isl-m1-Treg.gene_exp.csv.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE106467 GSE106467_Isl-4R_vs_Spl-4R.gene_exp.csv.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE106467 GSE106467_Isl-m1-Treg_vs_Spl-mR.gene_exp.csv.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE106467 GSE106467_Spl-4R_vs_Spl-mR.gene_exp.csv.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE106488 GSE106488_gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE106605 GSE106605_gene_exp.diff.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE106768 GSE106768_WT-YPD_v_htl1d-YPD_gene_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
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GSE106768 GSE106768_WT-YPGR_v_htl1d-YPGR_gene_differential_expression_testing.txt.gz conservative conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE106768 GSE106768_WT_v_htl1d_gene_differential_expression_testing.txt.gz conservative conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE106768 GSE106768_WT_v_npl6d_gene_differential_expression_testing.txt.gz conservative conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE106768 GSE106768_WT_v_rsc1d_gene_differential_expression_testing.txt.gz conservative conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE106768 GSE106768_WT_v_rsc2d_gene_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE106768 GSE106768_WT_v_rtt102d_gene_differential_expression_testing.txt.gz conservative conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE106768 GSE106768_htl1d-YPGR_v_htl1d-YPD_gene_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE106845 GSE106845_cds_exp.diff.txt.gz conservative other NA NA NA NA GPL18618 Pyricularia oryzae 318829 NA NA
GSE107133 GSE107133_20141113_Rodriguez_Maize_MACE.txt.gz-set-0 conservative other NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE107199 GSE107199_polyIC_vs._WT_ctrl_all.xlsx.gz-set-1 conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE107389 GSE107389_NTC.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE107391 GSE107391_RNAseq_gene_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE107391 GSE107391_RNAseq_transcript_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE107434 GSE107434_RNASeq-mice-CTX-6week_cuffdiff_KOvsWT_genes.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE107434 GSE107434_RNASeq-mice-CTX-6week_cuffdiff_KOvsWT_isoforms.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE107529 GSE107529_gene_expression_level.xlsx-sheet-Sheet1 conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107529 GSE107529_gene_expression_level.xlsx-sheet-sevgal4 vs sevgal4rasv12 conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107529 GSE107529_gene_expression_level.xlsx-sheet-sevgal4 vs sevgal4rasv12wrnai conservative other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107529 GSE107529_gene_expression_level.xlsx-sheet-sevgal4rasv12 vs rasv12wrnai conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107529 GSE107529_gene_expression_level.xlsx-sheet-sevgal4 vs rasv12ep3037 conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107529 GSE107529_gene_expression_level.xlsx-sheet-rasv12 vs rasv12EP3037 conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107529 GSE107529_gene_expression_level.xlsx-sheet-rasv12wrnai vs rasv12EP3037 conservative other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE107564 GSE107564_control.vs.shIMP_75_treated.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE107564 GSE107564_control.vs.shIMP_77_treated.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE107578 GSE107578_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE107762 GSE107762_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE108005 GSE108005_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE108094 GSE108094_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE108347 GSE108347_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE108418 GSE108418_tagged_EZH2_T372E_overexpression_vs_overexpressing_cells.DESeq2_Results.xlsx conservative other NA other NA GPL18573 Homo sapiens 9606 NA NA
GSE108418 GSE108418_tagged_EZH2_T372E_overexpression_vs_tagged_EZH2_T372A_overexpression.DESeq2_Results.xlsx conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE108451 GSE108451_metaseqr_colvip75ffdare_wt_sfs.txt.gz conservative other NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE108451 GSE108451_metaseqr_colvip75ffdare_wt_vics.txt.gz conservative conservative NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE108451 GSE108451_metaseqr_dare_wt_sfs.txt.gz conservative conservative NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE108451 GSE108451_metaseqr_dare_wt_vics.txt.gz conservative conservative NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE108662 GSE108662_KD_vs_NT_cuffdiff_gene_exp.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE108676 GSE108676_Human_gene_exp.diff.gz conservative other NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE108676 GSE108676_Human_gene_exp.diff.gz conservative other NA NA NA NA GPL24454 Macaca mulatta 9544 NA NA
GSE108678 GSE108678_PIPELINE_2_ALL_DATA.xlsx conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE108794 GSE108794_ESC_Differentiation_RNA-Seq.xlsx-sheet-noDox vs NLS conservative other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE108798 GSE108798_CNOT1_CNOT7_shRNA.xlsx-sheet-noTarget vs CNOT1 conservative other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE108798 GSE108798_CNOT1_CNOT7_shRNA.xlsx-sheet-noTarget vs CNOT7 conservative other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE108800 GSE108800_Chr_dox_noDox_gene_exp.xlsx conservative other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE108836 GSE108836_gene_expSC_DC.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE108836 GSE108836_gene_expSS_DS.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE108836 GSE108836_gene_expSS_SC.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE109065 GSE109065_Root_Cuffdiff_result.txt.gz conservative other NA NA NA NA GPL24498 Vitis riparia 96939 NA NA
GSE109111 GSE109111_CuffDiff_DGE_genes.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE109111 GSE109111_NTC_KD_DESeq_analysis_Result_Table.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE109111 GSE109111_WT_NTC_DESeq_analysis_Result_Table.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE109443 GSE109443_CRTC3-Bko-SVF_gene_exp.diff.gz conservative conservative NA NA NA NA GPL16417 Mus musculus 10090 NA NA
GSE109472 GSE109472_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE109522 GSE109522_gene_exp.diff.gz conservative conservative NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE109753 GSE109753_gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE109754 GSE109754_gene_exp.diff.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE109806 GSE109806_MockVsRalt_gene_exp.diff.gz conservative other NA NA NA NA GPL24552 Felis catus 9685 NA NA
GSE109870 GSE109870_gene_exp.diff.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE110045 GSE110045_Ctrl_vs_DAC_diff_expr.xlsx.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE110045 GSE110045_Ctrl_vs_PARA_DAC_diff_expr.xlsx.gz conservative other NA other NA GPL18573 Homo sapiens 9606 NA NA
GSE110045 GSE110045_Ctrl_vs_PARA_diff_expr.xlsx.gz conservative conservative NA other NA GPL18573 Homo sapiens 9606 NA NA
GSE110334 GSE110334_NSMRep1_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE110334 GSE110334_NSMRep2_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE110334 GSE110334_NSMRep3_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE110677 GSE110677_HMEC_RNAseq.DiffGeneExp.tdt.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE110677 GSE110677_HMEC_RNAseq.DiffGeneExp.tdt.txt.gz conservative other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE110998 GSE110998_gene_exp_N2_vs_fog2_N6_PC_GEO.xlsx.gz-sheet-gene_exp.diff conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE110998 GSE110998_gene_exp_N2_vs_fog2_dT_PC_GEO.xlsx.gz-sheet-gene_exp.diff conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE111244 GSE111244_gene_exp.diff.Th0_48h.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE111244 GSE111244_gene_exp.diff.Th17_48h.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE111294 GSE111294_female_gene_exp.diff.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE111294 GSE111294_male_gene_exp.diff.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE111792 GSE111792_cuffdiff_seedlingB73_FPKMvalues.txt.gz conservative other NA NA NA NA GPL20156 Zea mays 4577 NA NA
GSE111911 GSE111911_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE112248 GSE112248_1_vs_2.diff.exp.txt.annot.txt.gz conservative conservative NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE112649 GSE112649_TAC_tree_RNAseq_processed_data_CLC_DEG_output.txt.gz-set-1 conservative conservative NA NA NA NA GPL15671 Prunus persica 3760 NA NA
GSE112778 GSE112778_WT_KO_TFH_CD2AP_Differential.txt.gz conservative other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE112936 GSE112936_Galaxy33-OG1RF_R6_R7_D983_R4_R5_transcript_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL23172 Enterococcus faecalis 1351 NA NA
GSE112936 GSE112936_Galaxy33-OG1RF_R6_R7_D983_R4_R5_transcript_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL24867 Enterococcus faecalis 1351 NA NA
GSE112936 GSE112936_Galaxy73-OG1RF_vs_D983_BHI_transcript_differential_expression_testing.txt.gz conservative conservative NA NA NA NA GPL23172 Enterococcus faecalis 1351 NA NA
GSE112936 GSE112936_Galaxy73-OG1RF_vs_D983_BHI_transcript_differential_expression_testing.txt.gz conservative conservative NA NA NA NA GPL24867 Enterococcus faecalis 1351 NA NA
GSE113085 GSE113085_gene_exp.diff.gz conservative other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE113114 GSE113114_Het_vs_KO.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE113240 GSE113240_eworo_vs_OreR_gene_exp_diff_Cuffdiff.txt.gz conservative other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE113240 GSE113240_eworo_vs_OreR_gene_exp_diff_Cuffdiff.txt.gz conservative other NA NA NA NA GPL21306 Drosophila melanogaster 7227 NA NA
GSE113400 GSE113400_all_FPKM_expression.txt.gz conservative other NA NA NA NA GPL20795 Homo sapiens 9606 NA NA
GSE113648 GSE113648_RNAseq_HGPS_cell_lines_vs_control.xlsx conservative other NA NA NA NA GPL18460 Homo sapiens 9606 NA NA
GSE113688 GSE113688_HDP_4days_Gene_Exp.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE113688 GSE113688_JunB_WT_KO_Gene_Exp.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE113688 GSE113688_WH_30days_Gene_Exp.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE114034 GSE114034_processed_data.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE114189 GSE114189_msc_lps_0_6_24_hrs_gene_exp.txt.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE114987 GSE114987_gene.txt.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE114998 GSE114998_Spreadsheet1_CT_Repbase.xlsx conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE115172 GSE115172_WTAvsRes4.txt.gz conservative other NA conservative NA GPL13112 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD09_v_PD11.batch1.novel.gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD09_v_PD12.batch1.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD10_v_PD11.batch1.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD10_v_PD12.batch1.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD11_v_PD12.batch1.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD19_v_PD20.batch2.novel.gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD19_v_PD21.batch2.novel.gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD19_v_PD22.batch2.novel.gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD20_v_PD21.batch2.novel.gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD20_v_PD22.batch2.novel.gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD21_v_PD22.batch2.novel.gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD28_v_PD29.batch3.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD28_v_PD31.batch3.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD29_v_PD30.batch3.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD29_v_PD31.batch3.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115349 GSE115349_PD30_v_PD31.batch3.novel.gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE115498 GSE115498_cuffdiff_2mmTassel_FPKMvalues.txt.gz conservative other NA NA NA NA GPL20156 Zea mays 4577 NA NA
GSE115554 GSE115554_RNAseq_Isoformsdiff_pilot.xlsx conservative other NA NA NA NA GPL19580 Arabidopsis thaliana 3702 NA NA
GSE115737 GSE115737_All_genes.xlsx conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE115739 GSE115739_G3gg.gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE115740 GSE115740_GW.fpkm.xlsx-sheet-White_V_Green conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE115740 GSE115740_GW.fpkm.xlsx-sheet-White_2_V_green_2 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE115743 GSE115743_TgCd2G3.fpkm.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE115845 GSE115845_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE115845 GSE115845_gene_exp.diff.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE116087 GSE116087_GD-WT_vs_CM-WT.gene_exp.diff.tsv.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE116476 GSE116476_gene_expression_level.xlsx-sheet-sevgal4uasgfp vs sevgal4wrnai conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE116476 GSE116476_gene_expression_level.xlsx-sheet-sevgal4EP3037 vs sevgal4GFP conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE116499 GSE116499_Control_NB4_vs_JMJD3_NB4.diff.exp.annot.txt.gz conservative other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE116607 GSE116607_set1_set2_invitro_CD8_GFP_Minus_plus_gene_differential_expression.xlsx-sheet-gene_exp conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE116610 GSE116610_gene_expression_level.xlsx-sheet-wt vs hsrw66 conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE116610 GSE116610_gene_expression_level.xlsx-sheet-wt vs hsp90 conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE116610 GSE116610_gene_expression_level.xlsx-sheet-hsrw66 vs hsp90 conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE116650 GSE116650_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE117559 GSE117559_gene_exp.diff.gz conservative conservative NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE117632 GSE117632_387_Hypoxia_vs_Normoxia_RNAseq_Processed.xlsx.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE117632 GSE117632_387_Hypoxia_vs_Normoxia_RNAseq_Processed.xlsx.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE117682 GSE117682_gene_exp.diff.gz conservative other NA NA NA NA GPL25386 Oreochromis mossambicus 8127 NA NA
GSE118108 GSE118108_4groups_gene_exp.diff.gz conservative other NA NA NA NA GPL23055 Bos taurus 9913 NA NA
GSE118108 GSE118108_PreVPost_gene_exp.diff.gz conservative other NA NA NA NA GPL23055 Bos taurus 9913 NA NA
GSE118239 GSE118239_RP.gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE118239 GSE118239_RS.gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE118371 GSE118371_gene_exp_ColxCol_hdg3Col.txt.gz conservative other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE118566 GSE118566_gene_exp.diff.gz conservative conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE118592 GSE118592_day10_results.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE118656 GSE118656_schulman_acldl_v_veh_interaction_results-genelist_1_.csv.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE118656 GSE118656_schulman_gw_v_veh_interaction_results-genelist_1_.csv.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE118656 GSE118656_schulman_kla_v_veh_interaction_results-genelist_2_.csv.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE119422 GSE119422_WTvBmi1gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE120241 GSE120241_gene_description.txt.gz-set-1 conservative other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE120293 GSE120293_CDYL-Processed_data.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE120293 GSE120293_CSDS-Processed_data.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE120844 GSE120844_DEG_CTRL_IFNG.txt.gz conservative other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE120844 GSE120844_DEG_CTRL_POMALYST.txt.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE120844 GSE120844_DEG_CTRL_POMIFNG.txt.gz conservative other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE120844 GSE120844_DEG_IFNG_POMIFNG.txt.gz conservative other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE120844 GSE120844_DEG_POMALYST_POMIFNG.txt.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE121241 GSE121241_Differential_Gene_Expression_CuffDiff.txt.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE122139 GSE122139_DEseq_SW001_SW002_DEG_list.csv.gz conservative other NA uniform NA GPL13112 Mus musculus 10090 NA NA
GSE122210 GSE122210_DMSO_vs_CKBA.diff.exp.annot.xls.gz conservative other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE122665 GSE122665_PP6fl_flmKC_vs_cKOmKC.diff.exp.annot.txt.gz conservative other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE122950 GSE122950_isoform_exp_diff.xls.gz-sheet-Control_vs_Treated conservative other NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE122992 GSE122992_DEseq_AR6-AR7-AR13-AR19_AR8-AR9-AR17-AR24_DEG_list.csv.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE123017 GSE123017_IMCD3_gene_exp_diff.csv.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE123017 GSE123017_IMCD3_gene_exp_diff.csv.gz conservative conservative NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE123017 GSE123017_RPE1_gene_exp_diff.csv.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE123017 GSE123017_RPE1_gene_exp_diff.csv.gz conservative conservative NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE123186 GSE123186_Lanno_et_al_2018_Cuffdiff.txt.gz conservative conservative NA NA NA NA GPL24063 Drosophila sechellia 7238 NA NA
GSE123277 GSE123277_Control_vs_Deferasirox_Treated.diff.gz conservative conservative NA NA NA NA GPL19036 Candida albicans 5476 NA NA
GSE32038 GSE32038_tss_group_exp.diff.gz conservative conservative NA NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE32038 GSE32038_cds_exp.diff.gz conservative conservative NA NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE32038 GSE32038_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE32038 GSE32038_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE33782 GSE33782_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE33782 GSE33782_isoform_exp.diff.txt.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE34097 GSE34097_aff2_genes_cufflinks.txt.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE34097 GSE34097_aff3_genes_cufflinks.txt.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE34097 GSE34097_aff4_genes_cufflinks.txt.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE34329 GSE34329_processed_RNAseq_N_way_cuffdiff_combined_replicates_NIvIvPAvPS1145.diff.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE35178 GSE35178_gene_exp.diff.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE35178 GSE35178_isoform_exp.diff.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE36005 GSE36005_emo_gene.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36005 GSE36005_res_gene.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36695 GSE36695_H1H9KSR_SFM.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1H9KSR_SFM.txt.gz conservative other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1H9KSR_hfSFM.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1H9KSR_hfSFM.txt.gz conservative other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1SFM_H9SFM.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1SFM_H9SFM.txt.gz conservative other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1SFM_hfSFM.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1SFM_hfSFM.txt.gz conservative other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9KSR_hfSFM.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9KSR_hfSFM.txt.gz conservative other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9SFM_hfSFM.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9SFM_hfSFM.txt.gz conservative other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36710 GSE36710_RBFOX1_Splicing_Events.txt.gz conservative other NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36866 GSE36866_gene_exp.diff.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE37111 GSE37111_clip.txt.gz conservative other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE37111 GSE37111_clip.txt.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE37703 GSE37703_miseq_cuffdiff_splicing.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_splicing.diff.gz conservative other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE38413 GSE38413_Maize_Pericarp_14DAP_mRNA-Seq_gene_exp.diff.gz conservative other NA NA NA NA GPL9361 Zea mays 4577 NA NA
GSE38413 GSE38413_Maize_Pericarp_25DAP_mRNA-Seq_gene_exp.diff.gz conservative other NA NA NA NA GPL9361 Zea mays 4577 NA NA
GSE38414 GSE38414_Maize_Silks_mRNA-Seq_gene_exp.diff.gz conservative other NA NA NA NA GPL9361 Zea mays 4577 NA NA
GSE39605 GSE39605_All_KOvsWT_filtered_final.xlsx.gz-sheet-All_KOvsWT_filtered conservative conservative NA other NA GPL9250 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2LZ_gene_exp.txt.gz conservative other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2LZ_gene_exp.txt.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2Pach_gene_exp.txt.gz conservative other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2Pach_gene_exp.txt.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2PreMeiotic_gene_exp.txt.gz conservative other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2PreMeiotic_gene_exp.txt.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE39812 GSE39812_FT_result_transcript_summary.tsv.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40187 GSE40187_gene_exp_diff_Control_NXD30001_fromtophat120_cufflinks102_c0_081612.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40187 GSE40187_gene_exp_diff_Control_NXD30001_fromtophat120_cufflinks102_c0_081612.txt.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE40187 GSE40187_gene_exp_diff_MG1_MG2_fromtophat120_cufflinks102_c0_081612.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40187 GSE40187_gene_exp_diff_MG1_MG2_fromtophat120_cufflinks102_c0_081612.txt.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE40228 GSE40228_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE40548 GSE40548_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE40548 GSE40548_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13393 Homo sapiens 9606 NA NA
GSE41090 GSE41090_WT_vs_KO_full_genes.tab.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE41487 GSE41487_ResultsContr123vsRas123Individual.xls.gz-sheet-Contr vs Ras1 conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE41487 GSE41487_ResultsContr123vsRas123Individual.xls.gz-sheet-Contr vs Ras2 conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE41487 GSE41487_ResultsContr123vsRas123Individual.xls.gz-sheet-Contr vs Ras3 conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE41487 GSE41487_ResultsContr123vsRas123Multiple.xls.gz-sheet-RawData Contr123 vs Ras123 conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE41487 GSE41487_ResultsContr123vsRas12Multiple.xls.gz-sheet-RawData Contr123 vs Ras12 conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE41908 GSE41908_E11.5_E13.5f_cuffdiff1.2.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE41908 GSE41908_E11.5_E13.5m_cuffdiff1.2.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE41908 GSE41908_E9.5_E11.5_cuffdiff1.2.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42443 GSE42443_Brg1cKO_gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_acute_gene.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_cds_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE44665 GSE44665_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE44668 GSE44668_gene_exp_diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_75M conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_50M conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_25M conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_20M conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_15M conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_10M conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp.xls.gz-sheet-adipose_5M conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round1 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round2 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round3 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round4 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round5 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round6 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round7 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round8 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round9 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46323 GSE46323_A_adipose_gene_exp_simluation_10M.xls.gz-sheet-adipose_10M_round10 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46486 GSE46486_young_old_deseq.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46502 GSE46502_diff_gene_exp_PR_all.xlsx.gz-sheet-gene_exp.diff conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-2 conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE47062 GSE47062_KO_vs_WT.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE47083 GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-0 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE47083 GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-1 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE47395 GSE47395_gene_exp.diff.anno.known.csv.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE47399 GSE47399_diff_exp_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48230 GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48230 GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_isoform_exp.diff.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE49097 GSE49097_BetweenGenotypes_gene_exp.diff.gz conservative conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE49097 GSE49097_CompareAll_gene_exp.diff.gz conservative conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE49097 GSE49097_Within_A_gene_exp.diff.gz conservative conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE49097 GSE49097_Within_B_gene_exp.diff.gz conservative other NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE49097 GSE49097_Within_WT_gene_exp.diff.gz conservative conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE49147 GSE49147_ESC_KO_vs_WT.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49147 GSE49147_iPS_PF1_vs_PF2.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49147 GSE49147_iPS_TTF1_vs_TTF2.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-B_vs_D_isoform_exp_diff conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-B_vs_E_isoform_exp_diff conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-C_vs_D_isoform_exp_diff conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49295 GSE49295_isoform_exp_diff.xls.gz-sheet-D_vs_E_isoform_exp_diff conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE49313 GSE49313_DRRi_GFPi_cds_exp.diff.txt.gz conservative conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE49313 GSE49313_DRRi_GFPi_cds_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49313 GSE49313_PhanDRR1.2_PhanGFP_cds_exp.diff.txt.gz conservative conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE49313 GSE49313_PhanDRR1.2_PhanGFP_cds_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49389 GSE49389_RNAseq_gene_exp.txt.gz conservative other NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-4 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-4 conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49700 GSE49700_aza.repeats.txt.gz conservative other NA NA NA NA GPL17552 Tuber melanosporum 39416 NA NA
GSE49843 GSE49843_gene_exp.diff_22345-22353.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50156 GSE50156_WT_36oC_15min_AND_WT_24oC.txt.gz conservative conservative NA NA NA NA GPL13988 Schizosaccharomyces pombe 4896 NA NA
GSE50156 GSE50156_mas5D_AND_WT_24oC.txt.gz conservative conservative NA NA NA NA GPL13988 Schizosaccharomyces pombe 4896 NA NA
GSE50156 GSE50156_nmt1-hsf1_MMThi-_AND_WT_MMThi-.txt.gz conservative other NA NA NA NA GPL13988 Schizosaccharomyces pombe 4896 NA NA
GSE50156 GSE50156_ssa2D_AND_WT_24oC.txt.gz conservative conservative NA NA NA NA GPL13988 Schizosaccharomyces pombe 4896 NA NA
GSE50203 GSE50203_gene_exp.diff.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE50203 GSE50203_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE50424 GSE50424_Adipose.tsv.gz conservative conservative NA NA NA NA GPL10287 Rattus norvegicus 10116 NA NA
GSE50424 GSE50424_Liver.tsv.gz conservative conservative NA NA NA NA GPL10287 Rattus norvegicus 10116 NA NA
GSE50554 GSE50554_Routine_gene.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50554 GSE50554_Routine_isoform.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50554 GSE50554_Stringent_gene.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50554 GSE50554_Stringent_isoform.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50557 GSE50557_rnaseq-lbl1-Cuffdiff_gene_expression.txt.gz conservative conservative NA NA NA NA GPL13977 Zea mays 4577 NA NA
GSE50557 GSE50557_rnaseq-lbl1-Cuffdiff_gene_expression.txt.gz conservative conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE50739 GSE50739_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE51119 GSE51119_IBH1KD_vs_Col_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE51119 GSE51119_IBH1ox_vs_Col_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE51119 GSE51119_bHLH159KD_vs_Col_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE51119 GSE51119_bHLH159ox_vs_Col_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE51847 GSE51847_Expression_table_LE-2_x_HR-3.txt.gz conservative conservative NA NA NA NA GPL15914 Schistosoma mansoni 6183 NA NA
GSE51893 GSE51893_wt_v_MZeomesa-sphere_gene_exp.txt.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE52201 GSE52201_RNAseq_processed_data_L_D_siLSD1.txt.gz conservative other NA NA NA NA GPL15433 Homo sapiens 9606 NA NA
GSE52367 GSE52367_Cuflinks_2338_2339.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE52385 GSE52385_siCtrl_VS_siSRA_assemblenewgenes.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE52385 GSE52385_siCtrl_VS_siSRA_notassemblenewgenes.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE52450 GSE52450_Cuffdiff_on_pre-pro-B_and_pro-B_aligned_reads_transcript_differential_expression_testing_Bv46.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52502 GSE52502_gene_exp.diff.gz conservative conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE52911 GSE52911_gene_exp.txt.gz conservative conservative NA NA NA NA GPL18025 Citrus maxima 37334 NA NA
GSE53022 GSE53022_mt_vs_wt.DESeq.txt.gz conservative other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE53040 GSE53040_wtDMSOvswtTX129.txt.gz conservative other NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE53040 GSE53040_wtDMSOvswtTX87.txt.gz conservative other NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE53470 GSE53470_gene_exp_P251_PCJ_3rep_combined.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE53470 GSE53470_gene_exp_P251_PJD_3rep_combined.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE53599 GSE53599_D5-1322_vs_RLuc-713_24hrs.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53599 GSE53599_D5-1322_vs_RLuc-713_48hrs.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53599 GSE53599_D5-2086_vs_RLuc-713_24hrs.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53599 GSE53599_D5-2086_vs_RLuc-713_48hrs.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53653 GSE53653_st10.5_Foxh1_MO_gene_exp_diff.txt.gz conservative other NA NA NA NA GPL13741 Xenopus tropicalis 8364 NA NA
GSE53653 GSE53653_st10.5_SB431542_gene_exp_diff.txt.gz conservative other NA NA NA NA GPL13741 Xenopus tropicalis 8364 NA NA
GSE53789 GSE53789_GFP_FACS_x_GFP_LCM-not_significant.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53789 GSE53789_GFP_FACS_x_WT_FACS-not_significant.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53789 GSE53789_GFP_LCM_x_GFP_FACS-not_significant.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53789 GSE53789_GFP_LCM_x_WT_FACS-not_significant.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53789 GSE53789_WT_FACS_x_GFP_FACS-not_significant.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53789 GSE53789_WT_FACS_x_GFP_LCM-not_significant.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53789 GSE53789_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53976 GSE53976_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13797 Gallus gallus 9031 NA NA
GSE54433 GSE54433_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-1 conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-2 conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE54641 GSE54641_DESeq.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE54641 GSE54641_cuffdiff2_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE55394 GSE55394_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE55596 GSE55596_LOLOdiff_nonovel.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55596 GSE55596_alldiff_nonovel.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55870 GSE55870_CAF90vsNF1493.xlsx.gz conservative conservative NA other NA GPL15907 Mus musculus 10090 NA NA
GSE56013 GSE56013_A.Wildtype_wholefly_DCVrel.Mock.txt.gz conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE56013 GSE56013_B.G9amutant_wholefly_DCVrel.Mock.txt.gz conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE56013 GSE56013_E.Wildtype_fatbody_DCVrel.Mock.txt.gz conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE56013 GSE56013_F.G9amutant_fatbody_DCVrel.Mock.txt.gz conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE56013 GSE56013_J.G9amutant_rel.to_Wildtype_DCV_Fatbody.txt.gz conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE56052 GSE56052_gene_exp.diff.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE56097 GSE56097_Cufflinks_CuffDiff_gene_exp.txt.gz conservative conservative NA NA NA NA GPL17296 Cavia porcellus 10141 NA NA
GSE56122 GSE56122_IFN-gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE56122 GSE56122_LPS-gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE56575 GSE56575_cds_exp.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE56966 GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_notest conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE56966 GSE56966_MyD88_WT.xlsx.gz-sheet-gene_notest conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE57227 GSE57227_PHH_GW_vs_DMSO_RNA_seq_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57254 GSE57254_Control_CELF1KD_abundances.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57396 GSE57396_Cuttdiff_cds_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE57517 GSE57517_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE57680 GSE57680_RPKM_luminal_epithelium.txt.gz conservative other NA NA NA NA GPL18480 Mus musculus 10090 NA NA
GSE57680 GSE57680_RPKM_stroma.txt.gz conservative conservative NA NA NA NA GPL18480 Mus musculus 10090 NA NA
GSE57682 GSE57682_Id2_3_Treg_G42_Cuffdiff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE57682 GSE57682_Id2_3_Treg_G42_Cuffdiff.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE58360 GSE58360_Cebpa.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58464 GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-0 conservative other NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE58464 GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-1 conservative conservative NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE58609 GSE58609_MEF_WT_DKO.deseq.txt.gz-set-0 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58609 GSE58609_MEF_WT_DKO.deseq.txt.gz-set-1 conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58662 GSE58662_Processed_Data.xls.gz-set-0 conservative other NA NA NA NA GPL9302 Arabidopsis thaliana 3702 NA NA
GSE58662 GSE58662_Processed_Data.xls.gz-set-1 conservative other NA NA NA NA GPL9302 Arabidopsis thaliana 3702 NA NA
GSE58662 GSE58662_Processed_Data.xls.gz-set-2 conservative other NA NA NA NA GPL9302 Arabidopsis thaliana 3702 NA NA
GSE58662 GSE58662_Processed_Data.xls.gz-set-3 conservative other NA NA NA NA GPL9302 Arabidopsis thaliana 3702 NA NA
GSE59017 GSE59017_gene_exp.diff.gz conservative other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE59017 GSE59017_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE59020 GSE59020_ETS1_gene_exp_all.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59020 GSE59020_U0126_gene_exp_all.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59290 GSE59290_ANTI_isoform_exp.diff.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE59290 GSE59290_MIR_isoform_exp.diff.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE59621 GSE59621_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59850 GSE59850_rhogrn_early_cuffdiff_out.diff.txt.gz conservative conservative NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE60171 GSE60171_cuffdiff.FGF-1day.vs.iBET-1day.txt.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE60171 GSE60171_cuffdiff.FGF-1day.vs.iBET-1day.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60171 GSE60171_cuffdiff.FGF-5days.vs.iBET-5days.txt.gz conservative other NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE60171 GSE60171_cuffdiff.FGF-5days.vs.iBET-5days.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60177 GSE60177_PseudomonasDESeq.txt.gz conservative conservative NA NA NA NA GPL18782 Pseudomonas aeruginosa PAO1 208964 NA NA
GSE60538 GSE60538_CuffDiff-Data_Coding.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE60538 GSE60538_CuffDiff-Data_Gene.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE60538 GSE60538_CuffDiff-Data_Isoform.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE60538 GSE60538_CuffDiff-Data_TSS.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE60630 GSE60630_PDC3_vs_DMSO_splicing.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60822 GSE60822_cuffdiff.control.ablation.tab.gz conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE60822 GSE60822_cuffdiff.control.induction.tab.gz conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE60822 GSE60822_cuffdiff.induction.ablation.tab.gz conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Hypoxia conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Normoxia conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs Cntrl Hypoxia conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs ELT-2 Hypoxia conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntl Normoxia vs ELT-2 Normoxia conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-ELT-Normoxia vs ELT-2 Hypoxia conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE61202 GSE61202_NICvsMOdifferential_expression.txt.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE61238 GSE61238_gene_exp.diff.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE61336 GSE61336_results_WTL_vs_WTZ.txt.gz conservative conservative NA NA NA NA GPL19185 Burkholderia cenocepacia 95486 NA NA
GSE61537 GSE61537_ahr-1ia03vsWild-type.xls.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE61537 GSE61537_ahr-1ju145vsWild-type.xls.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE61566 GSE61566_cds.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61566 GSE61566_promoters.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61566 GSE61566_splicing.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61733 GSE61733_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE61796 GSE61796_NG_Induced_transcript_changes.txt.gz conservative other NA NA NA NA GPL13899 Solanum tuberosum 4113 NA NA
GSE61845 GSE61845_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61955 GSE61955_2hr.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61969 GSE61969_gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61969 GSE61969_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE62040 GSE62040_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-E VS LYP9-E conservative other NA NA NA NA GPL15432 Oryza sativa 4530 NA NA
GSE62200 GSE62200_Table_S6.xls.gz conservative other NA NA NA NA GPL15432 Oryza sativa 4530 NA NA
GSE62563 GSE62563_gene_expression.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE62633 GSE62633_Differential_expression_table.txt.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE62647 GSE62647_Setd8_differential_expression_analyses.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE62668 GSE62668_Embryo.txt.gz conservative conservative NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE62668 GSE62668_Sperm.txt.gz conservative conservative NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-1 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-2 conservative conservative NA other NA GPL11154 Homo sapiens 9606 NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-3 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63133 GSE63133_D.rerio_SVCV_infected__24K__vs_control_0K.txt.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE63133 GSE63133_D.rerio_SVCV_infected__24S__vs_control_0S.txt.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE63133 GSE63133_D.rerio_SVCV_infected__6K__vs_control_0K.txt.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE63133 GSE63133_D.rerio_SVCV_infected__6S__vs_control_0S.txt.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE63226 GSE63226_WRR+vsWRR-.xls.gz conservative other NA NA NA NA GPL13797 Gallus gallus 9031 NA NA
GSE63300 GSE63300_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63485 GSE63485_KS_J1Csh63_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63485 GSE63485_KS_J1Csh95_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63485 GSE63485_shAML1_ETO_vs_shControl.all_gene_exp.tbl.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63555 GSE63555_Ago2_immunoprecipitation_cuffdiff_fpkm.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE63555 GSE63555_Gene_expression_cuffdiff_fpkm.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE63570 GSE63570_Rec_siRNA_RNA-seq.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63748 GSE63748_exp_7d4h_diff.txt.gz conservative conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE63794 GSE63794_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63810 GSE63810_BCKO_RNASeq_Data.xlsx-sheet-GenesDiffExp conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63838 GSE63838_cds_exp_diff_2D.txt.gz conservative other NA NA NA NA GPL19491 Solanum pimpinellifolium 4084 NA NA
GSE63889 GSE63889_Diff_0U_120U_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63889 GSE63889_Diff_120U_120C_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE64025 GSE64025_gene_exp.diff.gz conservative conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE64185 GSE64185_gene_exp.diff.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE64455 GSE64455_cuffdiff_out.txt.gz conservative conservative NA NA NA NA GPL18480 Mus musculus 10090 NA NA
GSE64544 GSE64544_LV_processed.txt.gz conservative other NA NA NA NA GPL16540 Canis lupus familiaris 9615 NA NA
GSE64544 GSE64544_MV_processed.txt.gz conservative conservative NA NA NA NA GPL16540 Canis lupus familiaris 9615 NA NA
GSE64641 GSE64641_leaf_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE64641 GSE64641_seedling_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE64687 GSE64687_FPKM_and_differential_expression_for_mRNA.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE64747 GSE64747_deseq_comp_DMSO_minus_TEX_vs_compound59_minus_TEX_with_annot_and_counts.txt.gz conservative conservative NA NA NA NA GPL19006 Staphylococcus aureus 1280 NA NA
GSE64757 GSE64757_All_FPKMs_GEO.csv.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE64840 GSE64840_2N_Ts65Dn_MEFs.gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE64854 GSE64854_promoters.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64854 GSE64854_splicing.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64854 GSE64854_tss_group_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64854 GSE64854_cds.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64854 GSE64854_cds_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64854 GSE64854_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64854 GSE64854_isoform_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE65025 GSE65025_WT-HSF_gene_exp.diff.gz conservative other NA NA NA NA GPL19657 Oryza sativa Japonica Group 39947 NA NA
GSE65039 GSE65039_gene_exp1.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE65321 GSE65321_RNASeqProcessedDESeqData_GSM1631482-GSM1631483.txt.gz conservative conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE65328 GSE65328_A17_6V.tab.gz conservative conservative NA NA NA NA GPL19708 Medicago truncatula 3880 NA NA
GSE65406 GSE65406_control_vs_gld1_DESeq.csv.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE65406 GSE65406_gld1_vs_tumorfast_DESeq.csv.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE65406 GSE65406_gld1_vs_tumorfed_DESeq.csv.gz conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE65406 GSE65406_tumorfed_vs_tumorfast_DESeq.csv.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE65406 GSE65406_youngadults_vs_gld1_DESeq.csv.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE65408 GSE65408_processed_data_file.csv.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE65987 GSE65987_FPKM_for_MEFs.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66155 GSE66155_regulation.txt.gz conservative conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE66232 GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep1.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66232 GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep2.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66445 GSE66445_M._a.-pES1-MATmcr3_methane_vs._M.a.-pES1-MATmcr3_methanol_GEO_Processed_data.xlsx-sheet-Sheet1 conservative conservative NA NA NA NA GPL19842 Methanosarcina acetivorans 2214 NA NA
GSE66478 GSE66478_isoform_exp.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66547 GSE66547_20150210-1545-2Cmut_vs_oocyteWt-deResults_gene.xls.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE66547 GSE66547_20150210-1545-2Cwt_vs_2Cmut-deResults_gene.xls.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE66547 GSE66547_20150210-1545-2Cwt_vs_oocyteWt-deResults_gene.xls.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE66547 GSE66547_20150828-oocyteMut_vs_oocyteWt-deResults.xlsx-sheet-Genes conservative conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE66575 GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.gene_exp conservative other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE66575 GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.isoform_e conservative conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE66716 GSE66716_Lim_et_al_14-3-3zKOWAT_Processed_data_Cuffdiff.xlsx conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE67001 GSE67001_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE67437 GSE67437_KO-ILC2-mLN_021815_vs_WT-ILC2-mLN_021815.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE67745 GSE67745_Eutrema_salsugineum_SH_YK.xlsx conservative conservative NA NA NA NA GPL20016 Eutrema salsugineum 72664 NA NA
GSE67787 GSE67787_con_bps_wex_RNAseq_gene_exp.diff.gz conservative other NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE67954 GSE67954_P_granule_RNAi_DESeq_output.txt.gz conservative other NA other NA GPL18245 Caenorhabditis elegans 6239 NA NA
GSE68102 GSE68102_gene_exp.diff.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE68229 GSE68229_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE68229 GSE68229_isoform_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE68360 GSE68360_gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68460 GSE68460_WSVSBS_gene_diff.xls.gz-sheet-Sheet1 conservative other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE68460 GSE68460_gene_exp.xls.gz-sheet-Sheet1 conservative conservative NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE68736 GSE68736_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68806 GSE68806_Galaxy_data_Cuffdiff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep1 CuffDiff Mock vs AGO2-KD conservative conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep1 CuffDiff Mock vs AGO2-KD conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep2 CuffDiff Mock vs AGO2-KD conservative conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep2 CuffDiff Mock vs AGO2-KD conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE69125 GSE69125_10408_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE69175 GSE69175_gene_exp.txt.gz conservative other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE69205 GSE69205_gene_exp.txt.gz conservative other NA NA NA NA GPL20238 Homo sapiens 9606 NA NA
GSE69855 GSE69855_gene_exp_ResvResVag.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE69855 GSE69855_gene_exp_ResvSham.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70068 GSE70068_GM_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70068 GSE70068_TNF_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70068 GSE70068_UT_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70108 GSE70108_G263_CuffDiff_WTvsDDX5Tko.tabular.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70108 GSE70108_G340_CuffDiff_WTvsRORgko.tabular.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70382 GSE70382_DESeq_allresp_vs_nonresp.xlsx-sheet-Blad1 conservative other NA NA NA NA GPL20640 Anguilla anguilla 7936 NA NA
GSE70544 GSE70544_Normoxia_vs_Hypoxia_Gencode_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70544 GSE70544_Normoxia_vs_Hypoxia_Rinn_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70544 GSE70544_Vehicle_vs_Cytokine_Gencode_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70544 GSE70544_Vehicle_vs_Cytokine_Rinn_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70584 GSE70584_Liberman2015_Wholeroot_CUFFLINKS_gene_exp.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE70668 GSE70668_DD_gene_exp.diff.csv.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE70699 GSE70699_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70711 GSE70711_IRF4hi.vs.IRF8hi.gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70711 GSE70711_IRF8cKO_GCBCell_RPKM_exp_1.csv.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70711 GSE70711_IRF8cKO_GCBCell_RPKM_exp_2.csv.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70728 GSE70728_KDM2B_RNAseq_DEG.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70785 GSE70785_gene_exp.diff.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE70806 GSE70806_rf6a_matrix.txt.gz conservative other NA NA NA NA GPL14954 Macaca mulatta 9544 NA NA
GSE70833 GSE70833_Rennoll_et_al_processed_data.xlsx-sheet-Cuffdiff conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE71159 GSE71159_E3KO_vs_EfCtrl_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71159 GSE71159_ECtrl_vs_E3KO_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71159 GSE71159_ECtrl_vs_EfCtrl_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71164 GSE71164_SCR-static_vs_SH-EZH2-static.tabular.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE71281 GSE71281_G53_veh_vs_SAA_Th17_CuffDiff_Gene_Differential.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE71284 GSE71284_control_WT2_WT3_C1_C2_vs_truncation_3kb1_3kb2_100kb1_100kb2_CUFFDIFF_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE71295 GSE71295_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE71527 GSE71527_KO_SNI_Sal_vs_KO_SNI_DMI.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71527 GSE71527_KO_naive_vs_KO_SNI_Sal.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71527 GSE71527_WT_SNI_DMI_vs_KO_SNI_DMI.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71527 GSE71527_WT_SNI_Sal_vs_KO_SNI_Sal.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71527 GSE71527_WT_SNI_Sal_vs_WT_SNI_DMI.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71527 GSE71527_WT_naive_vs_KO_naive.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71527 GSE71527_WT_naive_vs_WT_SNI_Sal.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-1 conservative other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-2 conservative other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71948 GSE71948_RNASeqProcessedDESeqData.txt.gz conservative other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE72059 GSE72059_21_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72105 GSE72105_Differential_Gene_Expression_Summary_myotubes.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72105 GSE72105_Differential_Gene_Expression_Summary_usp10.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72178 GSE72178_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72286 GSE72286_548B_Ter119+-gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE72286 GSE72286_560I548B_Ter119+gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE72286 GSE72286_560I548B_Ter119-gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE72286 GSE72286_560I_Ter119+-gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE72321 GSE72321_annotated_diffana_6-OHDA-6-OHDA_En.xlsx conservative conservative NA other NA GPL13112 Mus musculus 10090 NA NA
GSE72321 GSE72321_annotated_diffana_gain-of-function_En1-ipsi-contra.xlsx conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72321 GSE72321_annotated_diffana_loss-of-function_En1LacZ-WT.xlsx conservative other NA spiky NA GPL13112 Mus musculus 10090 NA NA
GSE72560 GSE72560_Enteric_Glia.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72712 GSE72712_ESCd_40-70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-d_lt40 conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE72712 GSE72712_ESCd_40-70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-u.cuffdiff conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE72712 GSE72712_ESCd_gt70_over_ESCd_40-70.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_40-70 conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE72712 GSE72712_ESCd_gt70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_lt40 conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE72712 GSE72712_ESCd_gt70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-u.cuffdiff conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE72712 GSE72712_ESCd_lt40_over_ESCu.cuffdiff.xlsx-sheet-EST-d_lt40_over_EST-u.cuffdiff conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE72761 GSE72761_DESeq_LS007-LS008-LS010_LS015-LS016-LS018_DEG_list.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72762 GSE72762_DEseq_LS023-LS024-LS025_LS030-LS031-LS032_DEG_list.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72764 GSE72764_DEseq_LS39-LS40-LS42_LS44-LS45-LS48_DEG_list.csv.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_SALT_gene_exp.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE72820 GSE72820_MDA1N-1P_RPKM.xlsx.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72820 GSE72820_MDA27N-27P_RPKM.xlsx.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72820 GSE72820_MDA2N-2P_RPKM.xlsx.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72820 GSE72820_MDA31N-31P_RPKM.xlsx.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72820 GSE72820_MDA33N-33P_RPKM.xlsx.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72820 GSE72820_MDA34N-34P_RPKM.xlsx.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72820 GSE72820_MDA3N-3P_RPKM.xlsx.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72830 GSE72830_tss_group_exp.diff.gz conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE72917 GSE72917_DP1_WTvKO.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE72917 GSE72917_DP2_WTvKO.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE72917 GSE72917_KO_DP1vDP2.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE72917 GSE72917_WT_DP1vDP2.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE72947 GSE72947_Dm_sir2_RNA-seq.xlsx-sheet-Analyzed Genes conservative other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE72994 GSE72994_cds_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72994 GSE72994_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72994 GSE72994_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72994 GSE72994_promoters.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72994 GSE72994_tss_group_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE73077 GSE73077_fpkm_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73289 GSE73289_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73615 GSE73615_cds.diff.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE73615 GSE73615_cds_exp.diff.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE73615 GSE73615_gene_exp.diff.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE73615 GSE73615_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE73615 GSE73615_promoters.diff.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE73615 GSE73615_tss_group_exp.diff.gz conservative conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE73678 GSE73678_Differential_gene_expression.xlsx.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73940 GSE73940_cuffdiff.gene_exp.diff.gz conservative other NA NA NA NA GPL21018 Gallus gallus 9031 NA NA
GSE73940 GSE73940_cuffdiff.isoform_exp.diff.gz conservative other NA NA NA NA GPL21018 Gallus gallus 9031 NA NA
GSE74131 GSE74131_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-0 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-1 conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-2 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-5 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74196 GSE74196_SnapC_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE74220 GSE74220_Expression_of_Protein_Coding_Genes_in_Control_and_IL1b_treated_human_chondrocytes.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE74868 GSE74868_ETS2_T72D_OE_Epi_RNAseq.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74893 GSE74893_ctrl_and_Tsc1ckO_gene_exp.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75614 GSE75614_processed_data_mrna-seq_differential_expression.xlsx conservative conservative NA NA NA NA GPL21196 Tachysurus vachellii 175792 NA NA
GSE75640 GSE75640_HR2_vs_control_2_gene_exp.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_up conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_up conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_up conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_up conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_down conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_up conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_down conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_up conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_down conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75833 GSE75833_DESeq-processed_FB.control_vs_FB.25mkM.4HT.txt.gz conservative conservative NA other NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE75878 GSE75878_cds_exp.diff.gz conservative other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE75878 GSE75878_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE75878 GSE75878_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE75878 GSE75878_tss_group_exp.diff.gz conservative conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE76125 GSE76125_SenesUntreated_vs_SenesTreated_gene_exp.diff.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE76151 GSE76151_A1_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE76151 GSE76151_A2B1A1_isoform_exp.diff.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE76151 GSE76151_A2B1_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE76190 GSE76190_OtA8535_vs_OtA8538_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76190 GSE76190_OtA8536_vs_OtA8539_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76190 GSE76190_OtA8537_vs_OtA8540_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76190 GSE76190_OtA8538_vs_OtA8541_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76190 GSE76190_OtA8539_vs_OtA8542_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76190 GSE76190_OtA8540_vs_OtA8543_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76232 GSE76232_isoforms.diff_exp_ann_result.xls.gz conservative other NA NA NA NA GPL15670 Ovis aries 9940 NA NA
GSE76287 GSE76287_rosettes_col0vdko_tair.txt.gz conservative other NA NA NA NA GPL19080 Arabidopsis thaliana 3702 NA NA
GSE76396 GSE76396_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE76453 GSE76453_cuffdiff_E2.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76453 GSE76453_cuffdiff_siCtl.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76453 GSE76453_cuffdiff_siZNF143.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76453 GSE76453_cuffdiff_veh.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76533 GSE76533_leaf.gene_exp.diff.gz conservative conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE76533 GSE76533_seedling.gene_exp.diff.gz conservative conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE76627 GSE76627_CNBP-cuffdif.xlsx.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE76663 GSE76663_cds.diff.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE76663 GSE76663_cds_exp.diff.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE76663 GSE76663_gene_exp.diff.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE76663 GSE76663_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE76663 GSE76663_promoters.diff.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE76663 GSE76663_splicing.diff.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE76663 GSE76663_tss_group_exp.diff.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE76682 GSE76682_EB_AM580gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76683 GSE76683_shHOXA7gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76771 GSE76771_ALL_gene_expression.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76864 GSE76864_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE76865 GSE76865_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE76991 GSE76991_Gcn5KD_H2O_DEseq.xls.gz conservative other NA NA NA NA GPL21248 Xenopus laevis 8355 NA NA
GSE77032 GSE77032_aza_vs_PBS.gene_exp.tsv.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77032 GSE77032_aza_vs_vc.gene_exp.tsv.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77032 GSE77032_combo_vs_PBS.gene_exp.tsv.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77032 GSE77032_combo_vs_aza.gene_exp.tsv.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77032 GSE77032_combo_vs_vc.gene_exp.tsv.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77032 GSE77032_vc_vs_PBS.gene_exp.tsv.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77034 GSE77034_aza_vs_PBS.gene_exp.tsv.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE77034 GSE77034_aza_vs_vc.gene_exp.tsv.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE77034 GSE77034_combo_vs_PBS.gene_exp.tsv.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE77034 GSE77034_combo_vs_aza.gene_exp.tsv.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE77034 GSE77034_combo_vs_vc.gene_exp.tsv.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE77034 GSE77034_vc_vs_PBS.gene_exp.tsv.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE77113 GSE77113_GC_WT_vs_Hdac3KO.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77113 GSE77113_Hdac3KO_non-GC_vs_GC.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77113 GSE77113_non-GC_WT_vs_Hdac3KO.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77185 GSE77185_gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77229 GSE77229_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77256 GSE77256_Cuffdiff_Telogen_HFSCs.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77303 GSE77303_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77304 GSE77304_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77395 GSE77395_A_OE_air_vs_Col_air.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE77422 GSE77422_H358_Control-GNF5.xlsx-sheet-Sheet1 conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77422 GSE77422_PC9M_Control-GNF5.xlsx conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77422 GSE77422_PC9M_SCR-AA.xlsx conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77422 GSE77422_PC9_Control-GNF5.xlsx conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77422 GSE77422_PC9_SCR-AA.xlsx conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77471 GSE77471_RNASEQ_differential_expression.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77499 GSE77499_Dd2CQ_Dd2_3D7_gene_exp.diff.gz conservative other NA NA NA NA GPL21078 Plasmodium falciparum 5833 NA NA
GSE77499 GSE77499_Dd2CQ_Dd2_3D7_isoform_exp.diff.gz conservative other NA NA NA NA GPL21078 Plasmodium falciparum 5833 NA NA
GSE77793 GSE77793_gene_exp_diff_fc_hepatocytes_DMSO_GL_TamerSallam_122012.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77862 GSE77862_nhay_-_Alb-Cre.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77901 GSE77901_SLNCR1_vs_vector.deseq.txt.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE77901 GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz conservative other NA anti-conservative 0.92 GPL18573 Homo sapiens 9606 NA NA
GSE77902 GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz conservative other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE78194 GSE78194_Table_s1.xls.gz-sheet-M arr VS con conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE78194 GSE78194_Table_s1.xls.gz-sheet-M tra VS arr conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE78194 GSE78194_Table_s1.xls.gz-sheet-EC arr VS con conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE78194 GSE78194_Table_s1.xls.gz-sheet-EC tra VS arr conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE78194 GSE78194_Table_s1.xls.gz-sheet-EC tra VS con conservative other NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-0 conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-1 conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-2 conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-3 conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-4 conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-5 conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78527 GSE78527_siSNRNP40_siControl_processed.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78965 GSE78965_C57Bl6_MCS_vs_FST_acute_gene_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE78965 GSE78965_C57Bl6_MCS_vs_FST_chronic_gene_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE79408 GSE79408_gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE79412 GSE79412_amiFPSa_gene_exp_diff.xlsx-sheet-Hoja1 conservative conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE79677 GSE79677_Crossbred_vs._Purebred_comparison_group.tabular.txt.gz conservative conservative NA NA NA NA GPL15749 Bos taurus 9913 NA NA
GSE79677 GSE79677_One_by_one_comparisons.tabular.txt.gz conservative conservative NA NA NA NA GPL15749 Bos taurus 9913 NA NA
GSE79680 GSE79680_Heat_shock_table.csv.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE79723 GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE79724 GSE79724_DEseq_LG3-LG6-LG9_LG2-LG5-LG8_DEG_list.csv.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE79758 GSE79758_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE79779 GSE79779_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE79822 GSE79822_cuffdiffs_mRNA.txt.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE80068 GSE80068_col_dms3_gene_exp.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80068 GSE80068_col_h2h9_gene_exp.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80068 GSE80068_col_nrpe1_gene_exp.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80301 GSE80301_col_rep1_mom1_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80301 GSE80301_col_rep1_nrpe1_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80301 GSE80301_col_rep1_pial1pial2_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80301 GSE80301_col_rep2_mom1_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80301 GSE80301_col_rep2_mom1pial2_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80301 GSE80301_col_rep2_pial2_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80349 GSE80349_results.txt.gz-set-1 conservative conservative NA NA NA NA GPL21742 Schizosaccharomyces pombe 4896 NA NA
GSE80370 GSE80370_col_morc6_gene_exp.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80370 GSE80370_col_morc6_gene_exp.diff.gz conservative other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE80370 GSE80370_col_suvh2suvh9_gene_exp.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80370 GSE80370_col_suvh2suvh9_gene_exp.diff.gz conservative other NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE80433 GSE80433_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE80503 GSE80503_RNASeqProcessedDESeqData.xlsx conservative conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE80554 GSE80554_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE80597 GSE80597_Processed_data_cuffdiff_output.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE80597 GSE80597_Processed_data_cuffdiff_output.txt.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE80972 GSE80972_frm_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81007 GSE81007_cds.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81007 GSE81007_cds_exp.diff.gz conservative other NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81007 GSE81007_gene_exp.diff.gz conservative other NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81007 GSE81007_isoform_exp.diff.gz conservative other NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81007 GSE81007_promoters.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81007 GSE81007_splicing.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81007 GSE81007_tss_group_exp.diff.gz conservative other NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81055 GSE81055_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81055 GSE81055_gene_exp.diff_bias.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81059 GSE81059_cns-control_vs_cns-hh.csv.gz conservative other NA other NA GPL15553 Schmidtea mediterranea 79327 NA NA
GSE81059 GSE81059_cns-control_vs_cns-ptc.csv.gz conservative other NA NA NA NA GPL15553 Schmidtea mediterranea 79327 NA NA
GSE81114 GSE81114_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE81123 GSE81123_Poplar_RNAseq_data.ods.txt.gz conservative conservative NA NA NA NA GPL21868 Populus tremula x Populus alba 80863 NA NA
GSE81191 GSE81191_Cuffdiff_Isoform.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81191 GSE81191_Cuffdiff_transcript.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81437 GSE81437_polyA_differential_gene_expression.txt.gz conservative other NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE81522 GSE81522_N2_vs_ok600_gene_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE81575 GSE81575_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81707 GSE81707_N2_HC125_RNA-seq_PairedEnd_gene_exp_diff.xlsx conservative conservative NA NA NA NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE81707 GSE81707_N2_HC125_RNA-seq_SingleEnd_gene_exp_diff.xlsx conservative conservative NA NA NA NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE81834 GSE81834_489_614_Gametocyte_Cuffdiff.xlsx.gz-sheet-Diff. Transcription conservative conservative NA NA NA NA GPL21940 Plasmodium yoelii 5861 NA NA
GSE81834 GSE81834_489_614_oo-spz_CuffDiff.xlsx.gz-sheet-Diff Transcription conservative conservative NA NA NA NA GPL21940 Plasmodium yoelii 5861 NA NA
GSE81858 GSE81858_AA_ABBB_gene_exp.diff.gz conservative conservative NA NA NA NA GPL21941 Equus caballus 9796 NA NA
GSE82164 GSE82164_Cuffdiff_transcript_differential_expression_testing.tabular.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE82164 GSE82164_Cuffdiff_gene_differential_expression_testing.tabular.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE82210 GSE82210_cuffdiff_lncOL1KO_vs_Ctrl.gene.fpkm.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE83214 GSE83214_ENAP1ox_ein2_air_vs_C2H4_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE83214 GSE83214_ENAP1ox_ein3eil1_air_vs_C2H4_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE83214 GSE83214_ein2_air_vs_C2H4_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE83214 GSE83214_ein3eil1_air_vs_C2H4_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE83217 GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siHdac4 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE83217 GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siBdnf conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE83265 GSE83265_gene_exp.diff.gz conservative conservative NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE83360 GSE83360_hg19_CsiRNA_RNF2siRNA_Cuffdiff_on_data_1__data_3__and_data_17_gene_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE83360 GSE83360_hg19_CsiRNA_RNF2siRNA_Cuffdiff_on_data_1__data_3__and_data_17_gene_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE83360 GSE83360_hg19_CsiRNA_Rsf1siRNA_Cuffdiff_on_data_1__data_2__and_data_17_gene_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE83360 GSE83360_hg19_CsiRNA_Rsf1siRNA_Cuffdiff_on_data_1__data_2__and_data_17_gene_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE83360 GSE83360_hg19_Rsf1siRNA_RNF2siRNA_Cuffdiff_on_data_2__data_3__and_data_17_gene_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE83360 GSE83360_hg19_Rsf1siRNA_RNF2siRNA_Cuffdiff_on_data_2__data_3__and_data_17_gene_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE83360 GSE83360_mESC_V6.5_gene_differential_expression_testing_.tabular.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE83360 GSE83360_mESC_V6.5_gene_differential_expression_testing_.tabular.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE83360 GSE83360_mESC_V6.5_transcript_differential_expression_testing_.tabular.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE83360 GSE83360_mESC_V6.5_transcript_differential_expression_testing_.tabular.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE83405 GSE83405_geneExpDiffData_E14_cells_pnldc1_silencing.xlsx-sheet-Φύλλο1 conservative conservative NA NA NA NA GPL16331 Mus musculus 10090 NA NA
GSE83406 GSE83406_gene_exp.diff.gz conservative other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE83555 GSE83555_WT-KO-mm9-gene_exp.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_12_P-T_11_12_C conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_19_1_P-T_11_19_1_C conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_72_P-T_72_C conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE83567 GSE83567_gene_exp.diff.gz conservative other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE83584 GSE83584_processed_data_Day0.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE83584 GSE83584_processed_data_Day3_5.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE83601 GSE83601_All_genes_in_controls_and_PTSD.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE83664 GSE83664_NS_M_vs_Input.isoform_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE83664 GSE83664_NS_vs_Input.isoform_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84249 GSE84249_cuffdiff_gene_differential_expression_testing.tab.gz conservative conservative NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE84296 GSE84296_Mouse_diff_exp_total.xls.gz-sheet-Sheet1 conservative conservative NA NA NA NA GPL16061 Homo sapiens 9606 NA NA
GSE84296 GSE84296_Mouse_diff_exp_total.xls.gz-sheet-VEGFA conservative conservative NA NA NA NA GPL16061 Homo sapiens 9606 NA NA
GSE84296 GSE84296_Mouse_diff_exp_total.xls.gz-sheet-CXCR4 conservative conservative NA NA NA NA GPL16061 Homo sapiens 9606 NA NA
GSE84296 GSE84296_human_diff_exp_total.xls.gz conservative other NA NA NA NA GPL16061 Homo sapiens 9606 NA NA
GSE84301 GSE84301_Pub_vs_Prepub.Differential_analysis_results.txt.gz conservative conservative NA NA NA NA GPL22146 Capra hircus 9925 NA NA
GSE84370 GSE84370_APC_0h_vs_1h_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84370 GSE84370_APC_0h_vs_2h_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84450 GSE84450_WT_UTvsKO_DTT_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84450 GSE84450_WT_UTvsKO_UT_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84450 GSE84450_WT_UTvsWT_DTT_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84450 GSE84450_WT_UTvsWT_DTT_splicing.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84450 GSE84450_WT_UTvsX_DTT_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84450 GSE84450_WT_UTvsX_UT_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_30-35_mm_vs_15-20_mm conservative other NA NA NA NA GPL22164 Postia placenta 104341 NA NA
GSE84610 GSE84610_mouse_RNAseq_summary.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84610 GSE84610_mouse_RNAseq_summary.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84786 GSE84786_gene_exp.xls.gz-sheet-gene_exp conservative conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE84786 GSE84786_gene_exp.xls.gz-sheet-Fold change conservative conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE84786 GSE84786_isoform_exp.xlsx-sheet-isoform_exp conservative conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE84786 GSE84786_isoform_exp.xlsx-sheet-Fold change conservative conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE84798 GSE84798_gene_exp.diff.gz conservative other NA NA NA NA GPL15579 Brassica napus 3708 NA NA
GSE84875 GSE84875_human_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84875 GSE84875_human_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84875 GSE84875_mouse_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84875 GSE84875_mouse_gene_exp.diff.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84933 GSE84933_gene_exp.diff.gz conservative conservative NA NA NA NA GPL22250 Oryza sativa Japonica Group 39947 NA NA
GSE85308 GSE85308_gene_exp.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85308 GSE85308_processed_data.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85321 GSE85321_Supplemental_Table_6_JHD2_OE_YAD_.xls.gz-sheet-OE_EV_YAD_Diff analysis conservative conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE85321 GSE85321_Supplemental_Table_7_JHD2_OE_YAR_.xls.gz-sheet-OE_EV_YAR_Diff analysis conservative other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE85402 GSE85402_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE85416 GSE85416_isoform_exp.diff.gz conservative other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE85442 GSE85442_cuffdiff.gene_exp_diff.allg.txt.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE85442 GSE85442_cuffdiff.isoform_exp.diff.txt.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE85442 GSE85442_cuffdiff.tss_group_exp.diff.txt.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE85576 GSE85576_Supplementary_Table_1.xlsx-sheet-MagohMos2_vs_Control conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE85863 GSE85863_Galaxy238-_Cuffdiff_on_data_40__data_35_and_others_gene_differential_expression_testing.txt.gz conservative other NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE85883 GSE85883_CM_D_expression.diff.xlsx-sheet-gene_exp conservative other NA NA NA NA GPL21179 Arabidopsis thaliana 3702 NA NA
GSE85883 GSE85883_CM_L_expression.diff.xlsx-sheet-gene_exp conservative other NA NA NA NA GPL21179 Arabidopsis thaliana 3702 NA NA
GSE86077 GSE86077_N2_EVvs28_D4.diff.gz conservative other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE86077 GSE86077_glp-1_EVvs28_D4.diff.gz conservative conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE86159 GSE86159_significance_calls_genes_overexpression.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE86159 GSE86159_significance_calls_genes_tam_timecourse.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE86202 GSE86202_Gene_differential_expression.xlsx conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE86323 GSE86323_gene_exp.diff.txt.gz conservative other NA NA NA NA GPL15749 Bos taurus 9913 NA NA
GSE86442 GSE86442_gene_differential_expression.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE86460 GSE86460_EVI1_vs_EVI1GATA2.gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE86837 GSE86837_gene_exp.diff.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE86867 GSE86867_WT_quiescent_456_vs_WT_dividing_123.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE86907 GSE86907_Ooi_lab_M_musculus_wt_and_drosha_long_cuffdiff_out.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE86907 GSE86907_Ooi_lab_M_musculus_wt_and_drosha_long_cuffdiff_out.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE86907 GSE86907_Ooi_lab_M_musculus_wt_and_drosha_mRNA_cuffdiff_out.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE86907 GSE86907_Ooi_lab_M_musculus_wt_and_drosha_mRNA_cuffdiff_out.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE86907 GSE86907_Ooi_lab_M_musculus_wt_and_drosha_short_cuffdiff_out.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE86907 GSE86907_Ooi_lab_M_musculus_wt_and_drosha_short_cuffdiff_out.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE86909 GSE86909_control_vs_nfia.gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE86909 GSE86909_control_vs_nfia.isoform_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE87071 GSE87071_T0_T60_gene_exp.diff.gz conservative conservative NA NA NA NA GPL14548 Escherichia coli 562 NA NA
GSE87071 GSE87071_T60_T120_gene_exp.diff.gz conservative conservative NA NA NA NA GPL14548 Escherichia coli 562 NA NA
GSE87071 GSE87071_gene_exp.diff.gz conservative conservative NA NA NA NA GPL14548 Escherichia coli 562 NA NA
GSE87168 GSE87168_Watson_et_al_TOXSCI-16-0457_Diff_Gen_Exp.csv.gz conservative conservative NA NA NA NA GPL22469 Oryzias latipes 8090 NA NA
GSE87240 GSE87240_gene_expnorliver.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE87240 GSE87240_gene_expsk.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE87240 GSE87240_hep_gene_exphep.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE87626 GSE87626_nc_vs_19_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE87635 GSE87635_CNOT3KO-WT.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE87855 GSE87855_gene_exp.diff.gz conservative other NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE87862 GSE87862_gene_exp.diff.gz conservative other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE87890 GSE87890_vgat1_csv.csv.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE87890 GSE87890_vgat2_csv.csv.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE87890 GSE87890_vglut1_csv.csv.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE87890 GSE87890_vglut2_csv.csv.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE87890 GSE87890_vglut3_csv.csv.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE88700 GSE88700_gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89168 GSE89168_36hpupalCNS_WT_dStimKD_CuffDiff.txt.gz conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE89168 GSE89168_72hpupalCNS_WT_dStimKD+Recovery_CuffDiff.txt.gz conservative conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE89245 GSE89245_2hr_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE89245 GSE89245_4hr_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE89245 GSE89245_6hr_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE89319 GSE89319_6hpf_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE89319 GSE89319_7hpf_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE89319 GSE89319_4hpf_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE89319 GSE89319_5hpf_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE89364 GSE89364_mav_RNASeq_exp_deqiangs.xlsx conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89549 GSE89549_gene_exp.xlsx conservative other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE89572 GSE89572_24h_DEGs.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89572 GSE89572_2h_DEGs.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89572 GSE89572_7d_DEGs.txt.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89796 GSE89796_161107_Supplementary_Information_FD2MinDiffExp.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89796 GSE89796_161107_Supplementary_Information_FD2MinDiffExp.txt.gz conservative other NA NA NA NA GPL22666 Dama dama 30532 NA NA
GSE89796 GSE89796_161107_Supplementary_Information_FD2ProDiffExp.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89796 GSE89796_161107_Supplementary_Information_FD2ProDiffExp.txt.gz conservative other NA NA NA NA GPL22666 Dama dama 30532 NA NA
GSE89796 GSE89796_161107_Supplementary_Information_hMSCMinDiffExp.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89796 GSE89796_161107_Supplementary_Information_hMSCMinDiffExp.txt.gz conservative other NA NA NA NA GPL22666 Dama dama 30532 NA NA
GSE89796 GSE89796_161107_Supplementary_Information_hMSCProDiffExp.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89796 GSE89796_161107_Supplementary_Information_hMSCProDiffExp.txt.gz conservative other NA NA NA NA GPL22666 Dama dama 30532 NA NA
GSE90022 GSE90022_gene_exp.diff.gz conservative other NA NA NA NA GPL19778 Ovis aries 9940 NA NA
GSE90876 GSE90876_Cuffdiff_PSM_vs_SM.txt.gz conservative conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE90876 GSE90876_Cuffdiff_SM_vs_SM_Dev.txt.gz conservative conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE90899 GSE90899_WTvsUPF1aKO_DEXSeq.csv.gz conservative conservative NA NA NA NA GPL15706 Tetrahymena thermophila 5911 NA NA
GSE90925 GSE90925_gene_exp.diff.gz conservative other NA NA NA NA GPL19580 Arabidopsis thaliana 3702 NA NA
GSE90969 GSE90969_Master_Deseq_EMC3_AT2.xlsx-sheet-Sheet1-set-0 conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE91000 GSE91000_gene_exp.diff.gz conservative other NA NA NA NA GPL18460 Homo sapiens 9606 NA NA
GSE91075 GSE91075_gene_exp_WT1_KO1.txt.gz conservative conservative NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE91075 GSE91075_gene_exp_WT2_KO2.txt.gz conservative conservative NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE91400 GSE91400_gene_exp.diff.gz conservative conservative NA NA NA NA GPL15083 Chlamydomonas reinhardtii 3055 NA NA
GSE91400 GSE91400_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL15083 Chlamydomonas reinhardtii 3055 NA NA
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative conservative NA NA NA NA GPL22790 Homo sapiens 9606 NA NA
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative conservative NA NA NA NA GPL22791 Drosophila melanogaster 7227 NA NA
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative conservative NA NA NA NA GPL22790 Homo sapiens 9606 NA NA
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative conservative NA NA NA NA GPL22791 Drosophila melanogaster 7227 NA NA
GSE92611 GSE92611_2h_gene_exp.diff.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE92611 GSE92611_4h_gene_exp.diff.gz conservative conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE92620 GSE92620_J2EvsKLF3_RNA-seq.csv.gz conservative other NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE92641 GSE92641_Uhrf1_gene_exp.xlsx conservative other NA NA NA NA GPL16417 Mus musculus 10090 NA NA
GSE92651 GSE92651_DMS114_Control_DMS114_Resistant_3uM_BGJ_differential_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE92651 GSE92651_RT112_Control_RT112_Resistant_5uM_BGJ_CDT_differential_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE92887 GSE92887_mouse_PC_hypox_vs_normox_FPKM.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE92887 GSE92887_mouse_PC_hypox_vs_normox_FPKM.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE92989 GSE92989_Drought_2_days.txt.gz conservative other NA NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE92989 GSE92989_Drought_3_days.txt.gz conservative other NA NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP_VS_LL-YY conservative other NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP conservative other NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-LL-YY conservative other NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE93206 GSE93206_Processed_data_files.xlsx-set-0 conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE93280 GSE93280_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE93280 GSE93280_isoform_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE93287 GSE93287_cuffdiff_gene_exp.diff.xlsx-sheet-cuffdiff gene_exp.diff conservative conservative NA NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE93314 GSE93314_E10_G1_vs_S_0.085_.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE93314 GSE93314_E10_S_vs_G1_0.085_.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE93314 GSE93314_E10_vs_E11_G1_0.085_.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE93314 GSE93314_E10_vs_E11_S_0.085_.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE93314 GSE93314_E11_G1_vs_S_0.085_.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE93314 GSE93314_E11_S_vs_G1_0.085_.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE93339 GSE93339_e125_Yap-mt_lung_all_genes.txt.gz conservative other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE93357 GSE93357_Cuffdiff_output.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE93620 GSE93620_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE93709 GSE93709_EBV-Ramos.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE93866 GSE93866_IDOE_GENE_EXPRESSION.xlsx conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE93990 GSE93990_gene_exp.diff.gz conservative conservative NA NA NA NA GPL21090 Aspergillus niger 5061 NA NA
GSE94120 GSE94120_K562pos_rel_abundance_1x1.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE94120 GSE94120_SKNSHpos_rel_abundance_1x1.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE94120 GSE94120_U2OSpos_rel_abundance_1x1.txt.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE94355 GSE94355_data_all_expressed.corr.xlsx conservative conservative NA NA NA NA GPL23015 Amphidinium carterae 2961 NA NA
GSE94390 GSE94390_gene_expression.xls.gz-sheet-Named Genes conservative conservative NA NA NA NA GPL20141 Monodelphis domestica 13616 NA NA
GSE94722 GSE94722_Mixed_vs_Media_genes.txt.gz conservative conservative NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE94722 GSE94722_PA_vs_Media_genes.txt.gz conservative conservative NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE94722 GSE94722_SA_vs_Media_genes.txt.gz conservative conservative NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE94724 GSE94724_gene_exp.diff.gz conservative conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_PPC_genes_diff.tsv.gz conservative other NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_genes_diff.tsv.gz conservative conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_PPC_genes_diff.tsv.gz conservative conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE94814 GSE94814_subcortex.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_4hpi.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_8hpi.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_12hpi.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_16hpi.txt.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_20hpi.txt.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94843 GSE94843_cuffdiff_mock_vs_lox.txt.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94843 GSE94843_cuffdiff_mock_vs_mnv.txt.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94853 GSE94853_genes_differentialexpression_matrix.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE94907 GSE94907_HC-ATB.txt.gz conservative other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE94907 GSE94907_HC-ATB.txt.gz conservative other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE94907 GSE94907_HC-LTBI.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE94907 GSE94907_HC-LTBI.txt.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE94907 GSE94907_LTBI-ATB.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE94907 GSE94907_LTBI-ATB.txt.gz conservative conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE94967 GSE94967_gene_exp.diff_A_B_GENE.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE94967 GSE94967_isoform_exp.diff_A_B_ISOFORM.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE94967 GSE94967_tss_group_exp.diff_A_B_TSS.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE94967 GSE94967_cds_exp.diff_A_B_CDS.diff.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE95056 GSE95056_Cortex_cds_exp_diff.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE95056 GSE95056_Hippo_cds_exp_diff.txt.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE95234 GSE95234_IPInputFPKM.xlsx conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE95234 GSE95234_NotInfectedInfectedFPKM.xlsx-set-0 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE95234 GSE95234_NotInfectedInfectedFPKM.xlsx-set-1 conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE95371 GSE95371_gene_exp.diff.gz conservative other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE95481 GSE95481_GCN5_RNAi_vs_WT_root_tip_gene_exp.diff.gz conservative other NA NA NA NA GPL22250 Oryza sativa Japonica Group 39947 NA NA
GSE95481 GSE95481_GCN5_RNAi_vs_WT_whole_root_gene_exp.diff.gz conservative other NA NA NA NA GPL22250 Oryza sativa Japonica Group 39947 NA NA
GSE95629 GSE95629_OvpvsCtrl.Differential_analysis_results_processed_data_.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE95679 GSE95679_Mishima_2017_Dcp2.txt.gz conservative other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE95814 GSE95814_gene_exp_CC.xlsx-sheet-gene_exp_CC_4_CC_5 conservative conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE95852 GSE95852_miRNA_wt_ko_p11.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE95852 GSE95852_miRNA_wt_ko_p27.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE95852 GSE95852_miRNA_wt_ko_p5.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE96552 GSE96552_SP_cont-vs-cKO_gene_exp.diff.gz conservative conservative NA NA NA NA GPL18480 Mus musculus 10090 NA NA
GSE96552 GSE96552_cKO_SP-vs-SR_gene_exp.diff.gz conservative other NA NA NA NA GPL18480 Mus musculus 10090 NA NA
GSE96684 GSE96684_Cuffdiff_4WT_4Mecp2_null_gene_differential_expression_testing.tabular.txt.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE96722 GSE96722_F1N-hippocampus_cuffdiff.xls.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE97021 GSE97021_WT_KO_RNAseq_cuffdiff_gene_exp.diff.gz conservative conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE97129 GSE97129_CG9879_vs_WT_CuffDiff_Output_BDGP5.txt.gz conservative conservative NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE97256 GSE97256_Y1differentialGenes.tab.gz conservative other NA NA NA NA GPL21930 Danio rerio 7955 NA NA
GSE97769 GSE97769_Diff_Exp_Results_24_0-vs-24_1_2.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97769 GSE97769_Diff_Exp_Results_24_0-vs-24_6.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97769 GSE97769_Diff_Exp_Results_24_6-vs-24_0.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97769 GSE97769_Diff_Exp_Results_24_6-vs-36_0.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97769 GSE97769_Diff_Exp_Results_24_6-vs-72_0.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97769 GSE97769_Diff_Exp_Results_36_0-vs-36_1_2.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97769 GSE97769_Diff_Exp_Results_72_0-vs-72_1_2.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97795 GSE97795_gene_exp.diff.gz conservative other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE97868 GSE97868_Suppl_Diff_Exp_Results_24_0-vs-72_0.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97868 GSE97868_Suppl_Diff_Exp_Results_24_6-vs-24_0.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97868 GSE97868_Suppl_Diff_Exp_Results_24_6-vs-36_0.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97868 GSE97868_Suppl_Diff_Exp_Results_24_6-vs-72_0.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97868 GSE97868_Suppl_Diff_Exp_Results_36_0-vs-72_0.txt.gz conservative other NA NA NA NA GPL23302 Ulva lactuca 63410 NA NA
GSE97980 GSE97980_N2_vs_nlg.xlsx-sheet-N2vsnlg_DE conservative conservative NA NA NA NA GPL19396 Caenorhabditis elegans 6239 NA NA
GSE97980 GSE97980_N2_vs_nrx.xlsx-sheet-N2vsnrx conservative conservative NA NA NA NA GPL19396 Caenorhabditis elegans 6239 NA NA
GSE97980 GSE97980_N2_vs_nrx_nlg.xlsx-sheet-N2_vs_nrx_nlg conservative conservative NA NA NA NA GPL19396 Caenorhabditis elegans 6239 NA NA
GSE98045 GSE98045_TSS_groups_differential_exp.txt.gz conservative other NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE98232 GSE98232_transcripts_differential_wtDFL-invDFL.txt.gz conservative other NA other NA GPL17021 Mus musculus 10090 NA NA
GSE98258 GSE98258_annotated_diffana_exp100j_p100+–p100++.xlsx conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE98258 GSE98258_annotated_diffana_exp100j_p100+–p100++.xlsx conservative other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE98258 GSE98258_annotated_diffana_exp30j_p30+–p30++.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE98258 GSE98258_annotated_diffana_exp30j_p30+–p30++.txt.gz conservative other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE98266 GSE98266_Murano_DSS_d0_Cuffdiff_gene_differential_expression_testing_.txt.gz conservative conservative NA NA NA NA GPL16417 Mus musculus 10090 NA NA
GSE98266 GSE98266_Murano_DSS_d11_Cuffdiff_gene_differential_expression_testing_.txt.gz conservative conservative NA NA NA NA GPL16417 Mus musculus 10090 NA NA
GSE98266 GSE98266_Murano_DSS_d4_Cuffdiff_gene_differential_expression_testing_.txt.gz conservative conservative NA NA NA NA GPL16417 Mus musculus 10090 NA NA
GSE98541 GSE98541_RPE1_diff_expression_WT_SAFA.xlsx conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE98576 GSE98576_gene_exp.diff.gz conservative conservative NA NA NA NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE98580 GSE98580_DESeq2_ERbeta_EV_HEK293.txt.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE98650 GSE98650_mb1_hdac3_cuffdiff_out.txt.gz conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE98875 GSE98875_Diff.summary.xlsx-sheet-all_genes conservative other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE98885 GSE98885_wlp2s_VS_WT_differential_expression.xlsx conservative other NA NA NA NA GPL19290 Oryza sativa 4530 NA NA
GSE98941 GSE98941_NvsP.csv.gz conservative other NA bimodal NA GPL16791 Homo sapiens 9606 NA NA
GSE99209 GSE99209_clones_A549_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE99209 GSE99209_clones_gene_exp.diff.gz conservative other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE99232 GSE99232_E10.5RET_WT_NULL.txt.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99247 GSE99247_GEO_gene_exp_JNA_NF.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE99397 GSE99397_CreNeg-MHCPos_vs_Control.CuffDiff.gene_exp.diff.gz conservative other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE99397 GSE99397_CreNeg-MHCPos_vs_CrePos-MHCNeg.CuffDiff.gene_exp.diff.gz conservative conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE99397 GSE99397_CrePos-MHCNeg_vs_Control.CuffDiff.gene_exp.diff.gz conservative other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE99522 GSE99522_cds.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99522 GSE99522_cds_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99522 GSE99522_gene_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99522 GSE99522_isoform_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99522 GSE99522_promoters.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99522 GSE99522_splicing.diff.gz conservative conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99522 GSE99522_tss_group_exp.diff.gz conservative other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99803 GSE99803_Fundc1-MKO_VS_WT_fpkm_gene_exp.xlsx conservative other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE99825 GSE99825_difference.txt.gz conservative conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE99938 GSE99938_RNAseq_CuffDiff_diff_gene_exp.tab.gz conservative conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE100367 GSE100367_CL6566_vs_CL6364_processed.txt.gz other other NA NA NA NA GPL15583 Danio rerio 7955 NA NA
GSE100367 GSE100367_CL6768_vs_CL6364_processed.txt.gz other other NA NA NA NA GPL15583 Danio rerio 7955 NA NA
GSE101458 GSE101458_Lnc23_WT_KO_normalizedExpression.xlsx other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE101643 GSE101643_Z-STIM_vs_WT-STIM_diffexp.txt.gz other other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE101994 GSE101994_bfx564.deseq.csv.gz other other NA other NA GPL19057 Mus musculus 10090 NA NA
GSE101995 GSE101995_bfx556.deseq.csv.gz other other NA other NA GPL17021 Mus musculus 10090 NA NA
GSE101996 GSE101996_bfx319.2month.table2.csv.gz other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE101996 GSE101996_bfx319.6month.table1.csv.gz other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE101996 GSE101996_bfx319.6month.table2.csv.gz other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE102543 GSE102543_p179_normalized_counts_table.xls.gz other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE102772 GSE102772_comparison_RNA_expression.xlsx-sheet-MDX other other NA other NA GPL21493 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_differentiation_day_2_to_3_transition.diff.gz other conservative NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_differentiaton_day_3_to_4_transition.diff.gz other conservative NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_Emerin_null_proliferation_to_day_0_differentiation_transition.diff.gz other conservative NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_differentiation_day_2_to_3_transition.diff.gz other other NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_differentiation_day_3_to_4_transition.diff.gz other conservative NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_proliferation_to_day_0_differentiation_transition.diff.gz other conservative NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_vs_Emerin_null_day_0_differentiation.xlsx-sheet-0six_gene_ann.diff other other NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_vs_Emerin_null_day_1_differentiation.xlsx-sheet-1six_gene_ann.diff other conservative NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_vs_Emerin_null_day_2_differentiation.xlsx-sheet-2six_gene_ann.diff other conservative NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_vs_Emerin_null_day_3_differentiation.xlsx-sheet-3six_gene_ann.diff other other NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_vs_Emerin_null_day_4_differentiation.xlsx-sheet-4six_gene_ann.diff other other NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE104560 GSE104560_WT_vs_Emerin_null_day_Proliferation.xlsx-sheet-psix_gene_ann.diff other other NA NA NA NA GPL16173 Mus musculus 10090 NA NA
GSE107661 GSE107661_D4117_WT_GYM.txt.gz other conservative NA NA NA NA GPL24333 Streptomyces coelicolor 1902 NA NA
GSE108018 GSE108018_WTKO_Saci_1107_DEseq2.csv.gz other conservative NA other NA GPL24383 Sulfolobus acidocaldarius DSM 639 330779 NA NA
GSE108418 GSE108418_tagged_EZH2_T372A_overexpression_vs_overexpressing_cells.DESeq2_Results.xlsx other other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE108418 GSE108418_tagged_EZH2_T372A_overexpression_vs_tagged_EZH2_overexpression.DESeq2_Results.xlsx other conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE108418 GSE108418_tagged_EZH2_T372E_overexpression_vs_tagged_EZH2_overexpression.DESeq2_Results.xlsx other other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE108418 GSE108418_tagged_EZH2_overexpression_vs_overexpressing_cells.DESeq2_Results.xlsx other other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE108896 GSE108896_Supplementary_Table_3.xlsx-sheet-deseq2_malevsfemale other other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE109185 GSE109185_E3_F5_DESeq2.csv.gz other conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE109844 GSE109844_CD4low_vs_murine_N_CD4_diff.xls.gz other other NA NA NA NA GPL20795 Homo sapiens 9606 NA NA
GSE109844 GSE109844_CD4low_vs_murine_N_CD4_diff.xls.gz other other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE110327 GSE110327_differential_expression.txt.gz other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE110971 GSE110971_Sm_vs_PBS_Gexon_KwGn_DESeq2-All_2.anntNM.txt.gz other other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE111082 GSE111082_Mouse_EV_N2NL_DESeq2.txt.gz other other NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE111082 GSE111082_Mouse_EV_N2NL_DESeq2.txt.gz other other NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE112367 GSE112367_adr1.adr2.ip.input.deseq.txt.gz other other NA NA NA NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE112404 GSE112404_Figure2_sorted_RNAseq_P8_WT_vs_Opn4DTA_DTA.xlsx-sheet-LD-P8-WTB_LD-P8-DTAKO.csv other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE112649 GSE112649_TAC_tree_RNAseq_processed_data_CLC_DEG_output.txt.gz-set-0 other conservative NA NA NA NA GPL15671 Prunus persica 3760 NA NA
GSE113252 GSE113252_DESeq.H_vs_K.xlsx.gz other other NA other NA GPL19176 Sus scrofa 9823 NA NA
GSE114652 GSE114652_trim9_sham_stroke.txt.gz other other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE115474 GSE115474_Untreated_Control_vs_Treatment.genesTABULATED.xls.gz other other NA NA NA NA GPL20084 Rattus norvegicus 10116 NA NA
GSE115950 GSE115950_DESeq2_genes_diffexp_by_fc_Migr_mLN_SPF_Tx_vs_Migr_pLN_SPF_Tx.csv.gz other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE116607 GSE116607_set1_set2_invitro_CD8_GFP_Minus_plus_gene_differential_expression.xlsx-sheet-status = ok other conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE116819 GSE116819_xlaevisrnaseq-run1-results-diffexpr-genelist-treated-vs-control.csv.gz other conservative NA NA NA NA GPL22393 Xenopus laevis 8355 NA NA
GSE117433 GSE117433_37flow_v_GSE117433_RTflow.RNAseqgene_exp.diff.gz other conservative NA NA NA NA GPL19036 Candida albicans 5476 NA NA
GSE118592 GSE118592_day5_results.txt.gz other conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE118674 GSE118674_Zhu_processed_data.xlsx.gz-sheet-Deseq2_raw_output other other NA NA NA NA GPL20150 Schmidtea mediterranea 79327 NA NA
GSE118994 GSE118994_DESeq2_delta-espL_vs_wt.csv.gz other conservative NA other NA GPL17879 Mycobacterium tuberculosis 1773 NA NA
GSE120077 GSE120077_processed_data.xlsx-sheet-Complete_Sheet other conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE121795 GSE121795_ResultsDESeqpaired.csv.gz other conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE122932 GSE122932_DifferentialExpression.xlsx-sheet-gRNA3_Cas9.vs.gRNA3 other conservative NA NA NA NA GPL21741 Danio rerio 7955 NA NA
GSE122932 GSE122932_DifferentialExpression.xlsx-sheet-ncapg2_gRNA3_Cas9.vs.phenol_red other other NA NA NA NA GPL21741 Danio rerio 7955 NA NA
GSE122932 GSE122932_DifferentialExpression.xlsx-sheet-ncapg2_gRNA3.vs.phenol_red other conservative NA NA NA NA GPL21741 Danio rerio 7955 NA NA
GSE33141 GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-mRNA-Transcripts-FPKM other other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE33141 GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-Pseudogenes-FPKM other other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE43614 GSE43614_diff_out.txt.gz other other NA NA NA NA GPL9269 Caenorhabditis elegans 6239 NA NA
GSE49587 GSE49587_L2_L3P1_2_DEUtable.txt.gz other conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE49587 GSE49587_L312hr_L3P1_2_DEUtable.txt.gz other conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE49700 GSE49700_FB_FLM.RNA.txt.gz other conservative NA NA NA NA GPL17552 Tuber melanosporum 39416 NA NA
GSE49700 GSE49700_aza.txt.gz other other NA NA NA NA GPL17552 Tuber melanosporum 39416 NA NA
GSE51144 GSE51144_all_exons.txt.gz other conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52551 GSE52551_delta_Rv3263_expr.txt.gz other conservative NA NA NA NA GPL17967 Mycobacterium tuberculosis H37Rv 83332 NA NA
GSE55682 GSE55682_16h.xls.gz other other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55682 GSE55682_20h.xls.gz other conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55682 GSE55682_24h.xls.gz other other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55682 GSE55682_48h.xls.gz other other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55682 GSE55682_Baf250a6days.csv.gz other other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE56058 GSE56058_differentialExpressionGenes_RD19.txt.gz other other NA NA NA NA GPL18445 Deinococcus deserti 310783 NA NA
GSE56966 GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_exp other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE56966 GSE56966_MyD88_WT.xlsx.gz-sheet-gene_exp other conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE58586 GSE58586_RNAseq-PDX-paired-tr-vs-untr_allintensity-filtered.txt.gz other other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59705 GSE59705_DEXseqresultstable.txt.gz other conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE59705 GSE59705_DEXseqresultstable.txt.gz other conservative NA NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-0 other conservative NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-1 other other NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-2 other conservative NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-3 other other NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-4 other other NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63750 GSE63750_chemlow-batch-result-using-R-DeSeq.csv.gz other other NA other NA GPL19476 Staphylococcus aureus 1280 NA NA
GSE63750 GSE63750_chemlow-batch-result-using-R-DeSeq.csv.gz other other NA other NA GPL20613 Staphylococcus aureus 1280 NA NA
GSE67335 GSE67335_LEF1_Th1.Vs.pMIG_Th1.DESeq_Analysis_DE_Genes.txt.gz other conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-0 other other NA NA NA NA GPL20002 Solanum pimpinellifolium 4084 NA NA
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-0 other other NA NA NA NA GPL20003 Solanum chilense 4083 NA NA
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-1 other other NA NA NA NA GPL20002 Solanum pimpinellifolium 4084 NA NA
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-1 other other NA NA NA NA GPL20003 Solanum chilense 4083 NA NA
GSE69113 GSE69113_AIPVUIP_differential_expression.txt.gz other other NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE69113 GSE69113_BIPVUIP_differential_expression.txt.gz other other NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE70860 GSE70860_DEsoma.csv.gz other conservative NA other NA GPL19052 Rattus norvegicus 10116 NA NA
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_C_compared_to_siRbfox1_3+EGFP.txt.gz other conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_N_compared_to_siRbfox1_3+EGFP.txt.gz other conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73321 GSE73321_FW_VS_BW_expression_diff.txt.gz other conservative NA NA NA NA GPL20940 Plecoglossus altivelis 61084 NA NA
GSE74929 GSE74929_ANOVA_gene_rpkm.txt.gz-set-0 other other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE74929 GSE74929_ANOVA_gene_rpkm.txt.gz-set-1 other other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE75332 GSE75332_Ad_AGGF1vsAd_NC.Differential_analysis_results.txt.gz other conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE78194 GSE78194_Table_s1.xls.gz-sheet-M tra VS con other other NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE78902 GSE78902_DEseq_DB001-DB004_DB002-DB003_DEG_list.csv.gz other conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE82008 GSE82008_rTreg-aTreg-RPKM_log2FC_pval.txt.gz-set-1 other other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE82008 GSE82008_rTreg-aTreg-RPKM_log2FC_pval.txt.gz-set-2 other conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE82008 GSE82008_rTreg-aTreg-RPKM_log2FC_pval.txt.gz-set-3 other conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE82008 GSE82008_rTreg-aTreg-RPKM_log2FC_pval.txt.gz-set-4 other conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE83137 GSE83137_H2_vs_Lanact_pval.csv.gz other other NA other NA GPL21996 Streptomyces albus 1888 NA NA
GSE83455 GSE83455_cuffdiff_alltimepoints.xlsx other conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_EPZ_x_K27M_EPZ other conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01dT other conservative NA NA NA NA GPL21297 Pseudomonas aeruginosa 287 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_v Vehicle_12dP-MI other other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE92971 GSE92971_run1513_gencode_DESeq2_earlyFGFvsControl_gene_diff_rawcnt.txt.gz other conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE93102 GSE93102_D39_625AA_VS_D39_WT_UT.csv.gz other other NA other NA GPL22880 Streptococcus pneumoniae D39 373153 NA NA
GSE94840 GSE94840_Alox5_vs_Control.all.gene.result.txt.gz other conservative NA other NA GPL17021 Mus musculus 10090 NA NA
GSE95006 GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-0 other uniform NA NA NA NA GPL23077 Helicobacter pylori J99 85963 NA NA
GSE95006 GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-1 other uniform NA NA NA NA GPL23077 Helicobacter pylori J99 85963 NA NA
GSE95850 GSE95850_RUCA-I_WT_vs_miR-203_KO_gene_expression.csv.gz other other NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE96814 GSE96814_Deseq2_MS2RsaA.xlsx-sheet-Feuil1 other conservative NA NA NA NA GPL19006 Staphylococcus aureus 1280 NA NA
GSE96814 GSE96814_Deseq_TotRNA.xlsx-sheet-Feuil1 other other NA NA NA NA GPL19006 Staphylococcus aureus 1280 NA NA
GSE97235 GSE97235_Nef_table.txt.gz other conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs WT other conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PM vs WT other conservative NA other NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs PM other conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE98387 GSE98387_gene_exp.txt.gz other conservative NA other NA GPL21493 Mus musculus 10090 NA NA
GSE98510 GSE98510_deSeq2_PTH_vs_C.txt.gz other other NA uniform NA GPL13112 Mus musculus 10090 NA NA
GSE98526 GSE98526_A2_vs_UA159T5.txt.gz other other NA NA NA NA GPL23431 Streptococcus mutans UA159 210007 NA NA
GSE98759 GSE98759_gene_exp.txt.gz other conservative NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE98871 GSE98871_DESeq_Lambert_data.xlsx-sheet-siREST vs siCTRL other conservative NA other NA GPL16791 Homo sapiens 9606 NA NA
GSE100829 GSE100829_N2_HPL2_J2IP_DESeqResults.xlsx spiky other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-2 spiky other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-3 spiky other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE101898 GSE101898_Galaxy123-CellXtype_QKO_vs_QT7L1.tabular.txt.gz spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE101898 GSE101898_Galaxy125-CellXtype_WT_vs_QKO.tabular.txt.gz spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE101898 GSE101898_Galaxy126-CellXtype_WT_vs_QT7.tabular.txt.gz spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE102138 GSE102138_Long_non_coding_RNA.txt.gz-set-1 spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE102138 GSE102138_Long_non_coding_RNA.txt.gz-set-2 spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-0 spiky other NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE102772 GSE102772_comparison_RNA_expression.xlsx-sheet-CASK spiky other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE102772 GSE102772_comparison_RNA_expression.xlsx-sheet-SAP97 spiky other NA NA NA NA GPL21493 Mus musculus 10090 NA NA
GSE103531 GSE103531_summary_lad1.csv.gz spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE103607 GSE103607_deseq.toptable.xlsx spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE105128 GSE105128_result.txt.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE108161 GSE108161_deseq2_results.txt.gz spiky other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE108392 GSE108392_Henna_RNA_results_annotated_shPPFIA1_vs_shScr.xlsx spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE108472 GSE108472_Soma_RNAseq.xlsx-sheet-diff_exp spiky other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE108896 GSE108896_Supplementary_Table_3.xlsx-sheet-deseq2_CAIAvsSAL spiky other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE109510 GSE109510_Differential_Normalized_Counts.txt.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE109540 GSE109540_RNAseq.csv.gz spiky other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE110698 GSE110698_HepG2_cyt_vs_HepG2_tot.xls.gz spiky other NA other NA GPL13112 Mus musculus 10090 NA NA
GSE111148 GSE111148_Astrocyte_Kir4.1cKO_DESeq2output.csv.gz spiky other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE112367 GSE112367_n2.adr2.ip.input.deseq.txt.gz spiky other NA NA NA NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE115606 GSE115606_piRNA.txt.gz spiky other NA NA NA NA GPL23323 Drosophila melanogaster 7227 NA NA
GSE116815 GSE116815_DESeq2_DP_ASL.txt.gz spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE116815 GSE116815_DESeq2_DPlike_ASL.txt.gz spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE116866 GSE116866_murine_3group_normalized_matrix.csv.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE117631 GSE117631_Cg1-Cre_PU.1_KO_Tumor_vs_control.txt.gz spiky other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE117632 GSE117632_Hypoxia_ALKBH1_Knockdown_RNAseq_Processed.xlsx.gz-sheet-DESeq2 Results spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE117632 GSE117632_Hypoxia_ALKBH1_Knockdown_RNAseq_Processed.xlsx.gz-sheet-DESeq2 Results spiky other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE117669 GSE117669_readcounts.txt.gz spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE118915 GSE118915_Ovol2_MutantvsControl_Processed.txt.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE122990 GSE122990_DEseq_ARC7-ARC10-ARC16_ARM4-ARM5-ARM6_DEG_list_1_.csv.gz spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-3 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-4 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE35616 GSE35616_DESeq.txt.gz spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36871 GSE36871_RNASeq_Mouse_Liver_NormalizedGeneSignal.txt.gz spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36872 GSE36872_NascentSeq_Mouse_Liver_NormalizedGeneSignal.txt.gz spiky other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-1 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-1 spiky other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-2 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-2 spiky other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-0 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-0 spiky other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-1 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-1 spiky other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-2 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-2 spiky other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-0 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-0 spiky other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-1 spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-1 spiky other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE44233 GSE44233_processed_data.txt.gz spiky other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE44233 GSE44233_processed_data.txt.gz spiky other NA NA NA NA GPL9319 Danio rerio 7955 NA NA
GSE46046 GSE46046_GenesTable.txt.gz spiky other NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE56013 GSE56013_I.G9amutant_rel.to_Wildtype_DCV_WholeFly.txt.gz spiky other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky other NA NA NA NA GPL18736 Nitrosomonas europaea 915 NA NA
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky other NA NA NA NA GPL18737 Nitrobacter winogradskyi 913 NA NA
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky other NA NA NA NA GPL18738 Nitrobacter winogradskyi 913 NA NA
GSE59980 GSE59980_RNA-seq_598-SKD.txt.gz-set-0 spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63161 GSE63161_diff-Gene-list.txt.gz spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63161 GSE63161_diff-Gene-list.txt.gz spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE66767 GSE66767_CD34_cord_blood.EET.txt.gz spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66767 GSE66767_CD34_cord_blood.EET.txt.gz spiky other NA NA NA NA GPL9052 Homo sapiens 9606 NA NA
GSE66767 GSE66767_U937.EET.txt.gz spiky conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66767 GSE66767_U937.EET.txt.gz spiky conservative NA NA NA NA GPL9052 Homo sapiens 9606 NA NA
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky other NA NA NA NA GPL20096 Camponotus castaneus 105051 NA NA
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky other NA NA NA NA GPL20097 Camponotus castaneus 105051 NA NA
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky other NA NA NA NA GPL20098 Ophiocordyceps unilateralis 268505 NA NA
GSE70860 GSE70860_DEaxons.csv.gz spiky other NA NA NA NA GPL19052 Rattus norvegicus 10116 NA NA
GSE71153 GSE71153_projectLindholmPerry_USDA0001AL_master_list.txt.gz spiky other NA NA NA NA GPL11153 Bos taurus 9913 NA NA
GSE72787 GSE72787_deseq2_closed_vs_open.tsv.gz spiky other NA NA NA NA GPL10287 Rattus norvegicus 10116 NA NA
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz spiky other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz spiky other NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE75247 GSE75247_processed_data.txt.gz-set-0 spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE75247 GSE75247_processed_data.txt.gz-set-1 spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE77351 GSE77351_Farshchian.txt.gz spiky other NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE77693 GSE77693_deseq.comparison.csv.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77769 GSE77769_RNA_diff_final.txt.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE78711 GSE78711_gene.exp.all.txt.gz spiky other NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE78711 GSE78711_gene.exp.all.txt.gz spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE78878 GSE78878_N2CvsN2P_score.txt.gz spiky other NA NA NA NA GPL15716 Caenorhabditis elegans 6239 NA NA
GSE79577 GSE79577_DESeq2_FTO_KO.csv.gz spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE79633 GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE80135 GSE80135_Lipo_siProx_sig_results.csv.gz spiky other NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE80135 GSE80135_siNeg_Lipo_results.csv.gz spiky other NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE80135 GSE80135_siNeg_siProx_SC_results.csv.gz spiky other NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE81251 GSE81251_Kdm6a_def_mouse_expression_value.xlsx spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84308 GSE84308_RNA.txt.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84492 GSE84492_Kdm5c_def_mouse_expression_values.txt.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84699 GSE84699_RNAseq_pcbp1kd_vs_control_DESeq2.txt.gz spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84699 GSE84699_RNAseq_pcbp1kd_vs_control_DESeq2.txt.gz spiky other NA NA NA NA GPL21273 Mus musculus 10090 NA NA
GSE85049 GSE85049_deseq2_mll3li_p53.txt.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85565 GSE85565_Result_Table.csv.gz spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Transient spiky other NA other NA GPL17021 Mus musculus 10090 NA NA
GSE85950 GSE85950_EHEC_plusminus_Symbioflor.xlsx spiky other NA NA NA NA GPL22365 Escherichia coli O157:H7 str. EDL933 155864 NA NA
GSE86202 GSE86202_1_TreatVSControl_circRNA_differential_expression.xlsx spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE86239 GSE86239_ETS2shRNA_gene_exp.diff.gz spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE86239 GSE86239_ETS2shRNA_gene_exp.diff.gz spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE87808 GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz spiky other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE88970 GSE88970_Whsc1_proB_DE.xlsx-sheet-4P_05_WT_vs_KO_results spiky other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE89115 GSE89115_DEG.xls.gz-sheet-DEG_setC_setA spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89115 GSE89115_DEG.xls.gz-sheet-DEG_setC_setE spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89115 GSE89115_DEG.xls.gz-sheet-DEG_setE_setA spiky other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE91001 GSE91001_Galaxy255-AveragedPerCRNAseqData.tabular.txt.gz spiky other NA NA NA NA GPL14548 Escherichia coli 562 NA NA
GSE91001 GSE91001_Galaxy255-AveragedPerCRNAseqData.tabular.txt.gz spiky other NA NA NA NA GPL20262 Escherichia coli O127:H6 str. E2348/69 574521 NA NA
GSE91001 GSE91001_PerC_RNAseq_averageddata.xls.gz-sheet-diffexp_rerun spiky other NA NA NA NA GPL14548 Escherichia coli 562 NA NA
GSE91001 GSE91001_PerC_RNAseq_averageddata.xls.gz-sheet-diffexp_rerun spiky other NA NA NA NA GPL20262 Escherichia coli O127:H6 str. E2348/69 574521 NA NA
GSE93206 GSE93206_Processed_data_files.xlsx-set-1 spiky other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE93748 GSE93748_shTAZ_in_DU145_proceeded_data.xlsx spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-BJ_ZIKV.Vs.BJ_Control.DESeq_Ana spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq spiky other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-ZIKV.Vs.Control.DESeq_Analysis_ spiky other NA spiky NA GPL18573 Homo sapiens 9606 NA NA
GSE94017 GSE94017_ATRA_versus_control_diff.xlsx spiky other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE97395 GSE97395_Treat_vs_control_diff.txt.gz spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE97469 GSE97469_HEPG2_EV_versus_shRNA.csv.gz spiky other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE98869 GSE98869_diffexp.tsv.gz spiky other NA other NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE100175 GSE100175_Supplementary_Table_1.xlsx-sheet-DRG_vs_trigeminal_LRT uniform other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE100175 GSE100175_Supplementary_Table_1.xlsx-sheet-DRG_vs_trigeminal_WALD uniform other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE100175 GSE100175_Supplementary_Table_1.xlsx-sheet-DRG_TRI+interactions_WALD uniform other NA other NA GPL21103 Mus musculus 10090 NA NA
GSE100175 GSE100175_Supplementary_Table_1.xlsx-sheet-male_vs_female_WALD uniform other NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE100175 GSE100175_Supplementary_Table_1.xlsx-sheet-male_female+interactions_WALD uniform other NA anti-conservative 0.80 GPL21103 Mus musculus 10090 NA NA
GSE101898 GSE101898_Galaxy124-CellXtype_QT7_vs_QT7L1.tabular.txt.gz uniform other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE102779 GSE102779_SmallRNA_CD95L.50hrs.Drosha_ko.xlsx uniform other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE104065 GSE104065_NSCs_E47KOvsWt_DESeq.txt.gz uniform other NA other NA GPL21103 Mus musculus 10090 NA NA
GSE105068 GSE105068_deseq_WT_versus_KO_lung_all_genes.txt.gz uniform other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE106652 GSE106652_Eye_JunctionSeq_allGenesResults.csv.gz uniform other NA uniform NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE114998 GSE114998_Spreadsheet2_CT_mRNAseq.xlsx uniform other NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE116462 GSE116462_Lncenc1_KD_deseq_table.txt.gz uniform other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE117610 GSE117610_PC9_parental_vs_DTC.csv.gz uniform other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE118501 GSE118501_diffexpr-results.csv.gz uniform other NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE119025 GSE119025_BSAVSFHR1_Gene_differential_expression.txt.gz uniform other NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE60756 GSE60756_Richards_092013_B6_vs_Cast_DESeq_Stats-NormSignal_Annotated.txt.gz uniform other NA spiky NA GPL15907 Mus musculus 10090 NA NA
GSE63884 GSE63884_gene_exp.diff_cenpk_imx372_aerobic.txt.gz uniform other NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE71133 GSE71133_Supplementary_Table_2.xlsx-sheet-FC > 0 uniform other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE71133 GSE71133_Supplementary_Table_2.xlsx-sheet-FC < 0 uniform other NA other NA GPL17021 Mus musculus 10090 NA NA
GSE73893 GSE73893_Results_DEXseq.txt.gz uniform other NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE84302 GSE84302_CTRL_vs_Ketamine.xlsx uniform other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84302 GSE84302_CTRL_vs_L803.xlsx uniform other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84302 GSE84302_CTRL_vs_siGsk3b.xlsx uniform other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84367 GSE84367_DEXseq-analysis_SPEN-EBvsWT-EB.csv.gz uniform other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE84367 GSE84367_DEXseq-analysis_SPEN-ISCvsWT-ISC.csv.gz uniform other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE84367 GSE84367_DEXseq-analysis_WT-ISCvsWT-EB.csv.gz uniform other NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE86476 GSE86476_DESeq2_DEXUS_edgeR_results.xlsx-sheet-DESeq2 uniform uniform NA NA NA NA GPL22400 Lactococcus lactis subsp. cremoris 1359 NA NA
GSE86476 GSE86476_DESeq2_DEXUS_edgeR_results.xlsx-sheet-DEXUS uniform other NA NA NA NA GPL22400 Lactococcus lactis subsp. cremoris 1359 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Vehicle_12dP-MI uniform uniform NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Sfrp2_12dP-MI uniform other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE94501 GSE94501_cuffdiff_gene_exp_diff.txt.gz uniform other NA NA NA NA GPL23027 Paulownia elongata 1903578 NA NA
GSE98084 GSE98084_FPKM_Replicate_1.xlsx uniform other NA NA NA NA GPL16430 Dugesia japonica 6161 NA NA
GSE98084 GSE98084_FPKM_Replicate_2.xlsx uniform other NA NA NA NA GPL16430 Dugesia japonica 6161 NA NA
Table 5: SRP and related stats for anti-conservative P value histograms. pi0 was calculated using limma::propTrueNull() function.
Accession suppdata_id Histogram Type QCType SRP fp rs ud Histogram after filter Type after filter SRP after filter fp after filter rs after filter ud after filter
GSE100245 GSE100245_gene_exp-proc.diff.txt.gz anti-conservative other 0.99 209 3919 60 NA NA NA NA NA NA
GSE100355 GSE100355_Diff_mcPC_VSMC.txt.gz anti-conservative anti-conservative 0.89 504 8552 1154 anti-conservative 0.93 57 1009 85
GSE100414 GSE100414_DN345_KK43_DESeq2.txt.gz anti-conservative anti-conservative 0.90 97 1661 210 anti-conservative 0.85 41 663 134
GSE100578 GSE100578_jmjc_vs_WT.txt.gz anti-conservative other 0.98 229 4246 102 NA NA NA NA NA NA
GSE100990 GSE100990_RNA_Seq_Nr4a1_CDKO_HSC_DESeq2_output.txt.gz anti-conservative anti-conservative 0.93 486 8586 703 anti-conservative 0.89 106 1797 251
GSE101142 GSE101142_Supplemental_table_1.txt.gz-set-0 anti-conservative anti-conservative 0.77 89 1304 515 anti-conservative 0.80 37 557 175
GSE101142 GSE101142_Supplemental_table_1.txt.gz-set-1 anti-conservative anti-conservative 0.79 84 1255 423 anti-conservative 0.82 34 524 144
GSE101142 GSE101142_Supplemental_table_1.txt.gz-set-2 anti-conservative anti-conservative 0.85 113 1828 382 anti-conservative 0.86 52 849 154
GSE101157 GSE101157_LargeRNA.shL1.100hrs.293T.xlsx.gz anti-conservative other 0.94 490 8792 552 NA NA NA NA NA NA
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-1 anti-conservative other 0.95 259 4665 273 NA NA NA NA NA NA
GSE101342 GSE101342_All_Genes_LincDUSP_V481_cells_DESeq2.csv.gz anti-conservative anti-conservative 0.86 373 6089 1161 anti-conservative 0.89 80 1346 195
GSE101342 GSE101342_All_Genes_LincDUSP_V703_cells_DESeq2.csv.gz anti-conservative anti-conservative 0.82 232 3634 937 anti-conservative 0.85 63 1010 210
GSE101480 GSE101480_Group370_vs_GroupCtrl.all.gene.result.txt.gz anti-conservative anti-conservative 0.85 399 6417 1374 NA NA NA NA NA NA
GSE101596 GSE101596_S14203_genesdiff_wo5.xlsx anti-conservative other 0.87 500 8236 1450 NA NA NA NA NA NA
GSE101939 GSE101939_WT_E16_H2ZKO_E16.anno.txt.gz anti-conservative other 0.95 179 3242 166 NA NA NA NA NA NA
GSE101996 GSE101996_bfx319.2month.table1.csv.gz anti-conservative anti-conservative 0.64 63 770 660 anti-conservative 0.40 7 56 215
GSE102060 GSE102060_BPA_vs_Control.txt.gz anti-conservative other 0.90 360 6181 724 NA NA NA NA NA NA
GSE102300 GSE102300_diffexpr-results.csv.gz anti-conservative anti-conservative 0.84 282 4504 1005 anti-conservative 0.83 39 611 157
GSE102369 GSE102369_deseq_differential_expression_results.txt.gz anti-conservative other 0.96 343 6223 304 NA NA NA NA NA NA
GSE102474 GSE102474_RNA_DESeq2.tsv.gz anti-conservative other 0.86 166 2726 492 NA NA NA NA NA NA
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-2 anti-conservative other 0.96 468 8554 359 NA NA NA NA NA NA
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-3 anti-conservative other 0.96 459 8359 387 NA NA NA NA NA NA
GSE102793 GSE102793_deseq2_genes.tsv.gz anti-conservative anti-conservative 0.83 456 7197 1776 anti-conservative 0.86 56 924 169
GSE102842 GSE102842_Input_gfp-La_WT_vs_RNA_IP_gfp-La_WT.txt.gz anti-conservative anti-conservative 0.89 255 4307 615 NA NA NA NA NA NA
GSE103405 GSE103405_Table_S1.xlsx anti-conservative anti-conservative 0.80 220 3353 1021 anti-conservative 0.78 60 885 317
GSE103415 GSE103415_DESeq2_genes_diffexp_by_fc_wildtype_vs_knockout.xls.gz anti-conservative anti-conservative 0.85 118 1911 382 anti-conservative 0.85 40 637 136
GSE103537 GSE103537_CD4low_GSE71645_diff.txt.gz anti-conservative anti-conservative 0.84 710 11374 2513 anti-conservative 0.91 93 1609 168
GSE103868 GSE103868_DESeq2_Results_01_MockTransfected_Vs_Untransfected.txt.gz anti-conservative anti-conservative 0.97 700 12902 414 anti-conservative 0.90 79 1355 160
GSE104065 GSE104065_NSCs_E12KOvsWt_DESeq.txt.gz anti-conservative anti-conservative 0.90 57 985 115 anti-conservative 0.80 12 174 55
GSE104415 GSE104415_processed.csv.gz anti-conservative anti-conservative 0.79 214 3234 1058 anti-conservative 0.83 25 386 98
GSE104560 GSE104560_Emerin_null_proliferation_vs_day_2_differentiation.diff.gz anti-conservative anti-conservative 0.92 460 8056 731 NA NA NA NA NA NA
GSE104560 GSE104560_Emerin_null_proliferation_vs_day_3_differentiation.diff.gz anti-conservative anti-conservative 0.90 492 8403 1045 NA NA NA NA NA NA
GSE104560 GSE104560_Emerin_null_proliferation_vs_day_4_differentiation.diff.gz anti-conservative anti-conservative 0.89 546 9180 1341 NA NA NA NA NA NA
GSE104560 GSE104560_WT_proliferation_vs_day_2_differentiation.diff.gz anti-conservative anti-conservative 0.98 351 6557 113 NA NA NA NA NA NA
GSE104560 GSE104560_WT_proliferation_vs_day_3_differentiation.diff.gz anti-conservative anti-conservative 0.89 501 8460 1189 NA NA NA NA NA NA
GSE104560 GSE104560_WT_proliferation_vs_day_4_differentiation.diff.gz anti-conservative anti-conservative 0.87 507 8330 1496 NA NA NA NA NA NA
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs VDA (sortDOWN) anti-conservative anti-conservative 0.82 216 3379 882 anti-conservative 0.84 53 846 192
GSE104604 GSE104604_EIF5A_RNA-seq_genes.xls.gz anti-conservative anti-conservative 0.78 147 2178 793 anti-conservative 0.81 44 684 194
GSE106371 GSE106371_SupplementalTableS1_counts.txt.gz anti-conservative anti-conservative 0.95 217 3901 231 anti-conservative 0.83 40 631 149
GSE106545 GSE106545_U251_WT_VS_AXLKO_FPKM.xlsx anti-conservative anti-conservative 0.83 300 4717 1195 NA NA NA NA NA NA
GSE106860 GSE106860_processed_data.txt.gz anti-conservative anti-conservative 0.91 189 3256 368 NA NA NA NA NA NA
GSE106985 GSE106985_Table_s1.xls.gz-sheet-D5.5MUT_D5.5WT.anno anti-conservative anti-conservative 0.94 662 11869 749 NA NA NA NA NA NA
GSE106985 GSE106985_Table_s1.xls.gz-sheet-D7.5MUT_D5.5MUT.anno anti-conservative anti-conservative 0.94 636 11365 756 NA NA NA NA NA NA
GSE106985 GSE106985_Table_s1.xls.gz-sheet-D7.5WT_D5.5WT.anno anti-conservative anti-conservative 0.94 633 11324 753 NA NA NA NA NA NA
GSE106985 GSE106985_Table_s1.xls.gz-sheet-D7.5MUT_D7.5WT.anno anti-conservative anti-conservative 0.94 617 11033 733 NA NA NA NA NA NA
GSE107052 GSE107052_processed_statistics_etc.txt.gz-set-0 anti-conservative anti-conservative 0.77 106 1556 595 NA NA NA NA NA NA
GSE107199 GSE107199_polyIC_vs._WT_ctrl_all.xlsx.gz-set-0 anti-conservative other 0.80 140 2119 672 NA NA NA NA NA NA
GSE107207 GSE107207_res.genes.hampshire.c-d.csv.gz anti-conservative anti-conservative 0.69 85 1113 731 anti-conservative 0.64 13 162 140
GSE107207 GSE107207_res.genes.pietrain.a-b.csv.gz anti-conservative anti-conservative 0.74 31 431 205 NA NA NA NA NA NA
GSE107419 GSE107419_DEG_N_vs_ESC_DEseq.xlsx anti-conservative anti-conservative 0.88 483 8116 1197 NA NA NA NA NA NA
GSE107419 GSE107419_DEG_P_vs_N_DEseq.xlsx anti-conservative other 0.97 403 7425 249 NA NA NA NA NA NA
GSE107419 GSE107419_DEG_Prl_vs_N_DEseq.xlsx anti-conservative anti-conservative 0.99 433 8131 92 NA NA NA NA NA NA
GSE107419 GSE107419_DEG_Prl_vs_P_DEseq.xlsx anti-conservative other 0.96 372 6819 261 NA NA NA NA NA NA
GSE107498 GSE107498_Supplementary_FIle_1_Sleuth_results.xlsx.gz-sheet-Sleuth Results anti-conservative anti-conservative 0.90 416 7080 914 NA NA NA NA NA NA
GSE107555 GSE107555_HL60_deseq_norm_countFeatures.txt.gz anti-conservative anti-conservative 0.91 232 4020 436 anti-conservative 0.72 26 359 192
GSE108106 GSE108106_DE_results_starved_vs_fed.txt.gz anti-conservative anti-conservative 0.88 211 3516 569 anti-conservative 0.80 42 636 200
GSE108435 GSE108435_gut_vs_liver.txt.gz anti-conservative anti-conservative 0.95 481 8653 523 anti-conservative 0.93 39 696 53
GSE108732 GSE108732_DEseq2-F.xlsx-sheet-DEseq2 output anti-conservative anti-conservative 0.90 39 666 85 anti-conservative 0.67 8 101 74
GSE108732 GSE108732_DEseq2-NF.csv.gz anti-conservative anti-conservative 0.91 42 719 83 NA NA NA NA NA NA
GSE108749 GSE108749_DMSO-vs-129_results.csv.gz anti-conservative other 0.89 191 3220 466 NA NA NA NA NA NA
GSE108898 GSE108898_deseq2_analysis_cml39_vs_wt.txt.gz anti-conservative anti-conservative 0.91 289 4983 552 anti-conservative 0.74 35 493 233
GSE109006 GSE109006_AM_Gore_Oct2016_RNAseq.txt.gz anti-conservative other 0.96 224 4056 200 NA NA NA NA NA NA
GSE109152 GSE109152_All.HFD_v_ND.2_counts.txt.gz anti-conservative anti-conservative 0.89 60 1017 147 NA NA NA NA NA NA
GSE109177 GSE109177_Ctrl_Untr_vs_Ctrl_PR20-ExpDiff_k562_.csv.gz anti-conservative anti-conservative 0.90 373 6367 804 anti-conservative 0.87 82 1352 227
GSE109177 GSE109177_SafePR50_vs_TMX2PR50-ExpDiff_neurons_.csv.gz anti-conservative other 0.95 205 3703 205 NA NA NA NA NA NA
GSE109279 GSE109279_DESeq2.DiffExp_WT_SIRT3KO_MEFs.txt.gz anti-conservative anti-conservative 0.91 416 7195 773 anti-conservative 0.91 103 1794 188
GSE109582 GSE109582_DESeq_results.csv.gz anti-conservative anti-conservative 0.92 281 4891 488 anti-conservative 0.91 86 1493 152
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-0 anti-conservative anti-conservative 0.71 82 1101 639 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-1 anti-conservative anti-conservative 0.83 76 1189 296 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-2 anti-conservative anti-conservative 0.80 113 1725 535 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-3 anti-conservative anti-conservative 0.63 65 785 714 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-4 anti-conservative anti-conservative 0.84 160 2569 567 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-5 anti-conservative anti-conservative 0.84 138 2207 499 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-6 anti-conservative anti-conservative 0.55 23 237 360 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-7 anti-conservative anti-conservative 0.79 112 1686 568 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-8 anti-conservative anti-conservative 0.81 114 1757 516 NA NA NA NA NA NA
GSE110255 GSE110255_PCT101800875_All_Data_saki_RPKM.csv.gz-set-9 anti-conservative anti-conservative 0.84 165 2637 592 NA NA NA NA NA NA
GSE110512 GSE110512_gene_exp.txt.gz anti-conservative anti-conservative 0.85 563 9113 1868 NA NA NA NA NA NA
GSE111012 GSE111012_450_vs_Phi11.txt.gz anti-conservative anti-conservative 0.91 30 528 56 anti-conservative 0.95 13 230 12
GSE111012 GSE111012_450_vs_Phi80.txt.gz anti-conservative anti-conservative 0.87 43 716 121 anti-conservative 0.82 19 291 78
GSE111189 GSE111189_diff-Deseq2-R-Oil-vs-85-Oil.txt.gz anti-conservative anti-conservative 0.79 349 5217 1803 anti-conservative 0.82 55 854 222
GSE111379 GSE111379_3chemos.80hrs.HeyA8.xlsx-sheet-All chemo samples.csv-set-1 anti-conservative other 0.97 501 9250 279 NA NA NA NA NA NA
GSE111666 GSE111666_E12_RNASEQ_MUT_v_KI.txt.gz anti-conservative other 0.69 93 1214 808 NA NA NA NA NA NA
GSE112903 GSE112903_Table_S2_Ccl19hi_TRC_Ccl19lo_TRC_Cxcl9_TRC.xlsx-sheet-Ccl19hi TRC anti-conservative anti-conservative 0.85 344 5563 1130 anti-conservative 0.91 61 1058 117
GSE112903 GSE112903_Table_S2_Ccl19hi_TRC_Ccl19lo_TRC_Cxcl9_TRC.xlsx-sheet-Ccl19lo TRC anti-conservative anti-conservative 0.87 152 2509 433 anti-conservative 0.85 38 606 129
GSE112903 GSE112903_Table_S2_Ccl19hi_TRC_Ccl19lo_TRC_Cxcl9_TRC.xlsx-sheet-Cxcl9+ TRC anti-conservative anti-conservative 0.76 121 1748 726 anti-conservative 0.80 32 482 147
GSE112903 GSE112903_Table_S3_MRC.xlsx anti-conservative anti-conservative 0.82 174 2722 707 anti-conservative 0.86 46 748 135
GSE112903 GSE112903_Table_S4_PvC.xlsx anti-conservative anti-conservative 0.92 192 3370 304 anti-conservative 0.86 48 781 150
GSE112903 GSE112903_Table_S5_CD34+_SC.xlsx anti-conservative anti-conservative 0.87 222 3689 604 anti-conservative 0.87 49 808 137
GSE112903 GSE112903_Table_S6_Inmt+_SC.xlsx anti-conservative anti-conservative 0.82 204 3165 862 anti-conservative 0.86 46 741 147
GSE112903 GSE112903_Table_S7_Nr4a1+_SC.xlsx-sheet-Nr4a1+ SC anti-conservative anti-conservative 0.86 266 4356 801 anti-conservative 0.88 55 924 140
GSE112903 GSE112903_Table_S7_Nr4a1+_SC.xlsx-sheet-Nr4a1+ Inmt+ SC anti-conservative anti-conservative 0.78 189 2811 985 anti-conservative 0.87 49 808 136
GSE112903 GSE112903_Table_S7_Nr4a1+_SC.xlsx-sheet-Nr4a1+ TRC anti-conservative anti-conservative 0.79 183 2744 935 anti-conservative 0.87 46 754 135
GSE112903 GSE112903_Table_S7_Nr4a1+_SC.xlsx-sheet-Nr4a1+ CD34+ SC anti-conservative anti-conservative 0.88 82 1368 223 anti-conservative 0.82 32 498 138
GSE112903 GSE112903_Table_S8_FDC.xlsx anti-conservative anti-conservative 0.87 201 3306 593 anti-conservative 0.86 45 739 140
GSE113333 GSE113333_Typhi_gene_exp.diff.gz anti-conservative anti-conservative 0.80 81 1241 375 NA NA NA NA NA NA
GSE113404 GSE113404_DESeq2_results_Mat2_OE_wt.xlsx anti-conservative anti-conservative 0.81 158 2431 699 anti-conservative 0.84 32 514 117
GSE113519 GSE113519_condition.DESeq2_results_allgenes.csv.gz anti-conservative anti-conservative 0.98 498 9232 226 anti-conservative 0.92 90 1576 150
GSE113683 GSE113683_DESeq2_res_Ax35_10x_vs._WT.csv.gz anti-conservative anti-conservative 0.98 33 615 15 anti-conservative 0.82 18 280 75
GSE113683 GSE113683_DESeq2_res_Ax35_30x_vs._WT.csv.gz anti-conservative anti-conservative 0.77 44 645 245 anti-conservative 0.78 23 335 121
GSE113716 GSE113716_DESeq2_results_t05_vs_t0.txt.gz anti-conservative anti-conservative 0.84 57 909 214 anti-conservative 0.85 42 683 144
GSE113716 GSE113716_DESeq2_results_t15_vs_t0.txt.gz anti-conservative anti-conservative 0.86 67 1099 213 anti-conservative 0.88 49 811 130
GSE113716 GSE113716_DESeq2_results_t1_vs_t0.txt.gz anti-conservative anti-conservative 0.82 57 887 246 anti-conservative 0.82 42 651 169
GSE113716 GSE113716_DESeq2_results_t2_vs_t0.txt.gz anti-conservative anti-conservative 0.85 66 1073 220 anti-conservative 0.86 47 768 143
GSE113716 GSE113716_DESeq2_results_t4_vs_t0.txt.gz anti-conservative anti-conservative 0.87 71 1161 209 anti-conservative 0.88 49 818 131
GSE113848 GSE113848_sleuth.de.results.wald.ctl.tsv.gz anti-conservative anti-conservative 0.87 1155 19192 3147 NA NA NA NA NA NA
GSE113900 GSE113900_Significant_genes.xlsx.gz anti-conservative anti-conservative 0.80 87 1319 417 NA NA NA NA NA NA
GSE113954 GSE113954_Warm_TRPM2-KO-1_Warm_WT-1.anno.txt.gz anti-conservative anti-conservative 0.87 317 5242 895 NA NA NA NA NA NA
GSE113954 GSE113954_Warm_TRPM2-KO-2_Warm_WT-2.anno.txt.gz anti-conservative other 0.89 365 6143 901 NA NA NA NA NA NA
GSE114336 GSE114336_Merkel_Keratinocytes_DEseq_RPKM.xlsx anti-conservative anti-conservative 0.84 426 6801 1542 NA NA NA NA NA NA
GSE114463 GSE114463_DESeq2_genes_diffexp_by_fc_N2_60_vs_O2_60.csv.gz anti-conservative anti-conservative 0.74 31 431 208 anti-conservative 0.79 1 21 7
GSE114917 GSE114917_High_vs_Low_LP4_removed_all_genes.tsv.gz anti-conservative anti-conservative 0.87 95 1574 268 anti-conservative 0.90 43 737 87
GSE115266 GSE115266_Horvath01_DESeq2_Differential_Gene_Expression.csv.gz anti-conservative anti-conservative 0.86 858 14003 2686 anti-conservative 0.91 92 1583 173
GSE116230 GSE116230_Smad4ff_vs_Smad4iECKO.deseq.res.csv.gz anti-conservative anti-conservative 0.64 259 3132 2799 anti-conservative 0.65 32 400 330
GSE116587 GSE116587_Littleetal_RNASEQ.xlsx anti-conservative other 0.97 23 426 14 NA NA NA NA NA NA
GSE116776 GSE116776_KO_vs_WT.txt.gz anti-conservative other 0.93 248 4400 338 NA NA NA NA NA NA
GSE117433 GSE117433_37flow_v_37static.RNAseqgene_exp.diff.gz anti-conservative other 0.80 87 1309 422 NA NA NA NA NA NA
GSE117433 GSE117433_RTflow_v_GSE117433_37Static.RNAseqgene_exp.diff.gz anti-conservative anti-conservative 0.80 112 1691 538 NA NA NA NA NA NA
GSE118116 GSE118116_sleuth_test_results.txt.gz anti-conservative anti-conservative 0.74 68 950 448 NA NA NA NA NA NA
GSE118217 GSE118217_AN_vs_AW.xlsx.gz anti-conservative other 0.97 138 2529 94 NA NA NA NA NA NA
GSE118334 GSE118334_Wnt11_WK_RNAseq_DiffExp.txt.gz-set-0 anti-conservative other 0.69 250 3300 2096 NA NA NA NA NA NA
GSE118334 GSE118334_Wnt11_WK_RNAseq_DiffExp.txt.gz-set-1 anti-conservative other 0.69 250 3300 2096 NA NA NA NA NA NA
GSE118334 GSE118334_Wnt11_WK_RNAseq_DiffExp.txt.gz-set-2 anti-conservative anti-conservative 0.98 1045 19365 509 NA NA NA NA NA NA
GSE118334 GSE118334_Wnt11_NP_RNAseq_DiffExp.txt.gz anti-conservative anti-conservative 0.96 442 8040 375 NA NA NA NA NA NA
GSE118490 GSE118490_HCT116_DE_Results.xlsx-sheet-HCT116_results_raw_noNA anti-conservative anti-conservative 0.88 434 7258 1118 anti-conservative 0.89 76 1287 171
GSE118552 GSE118552_sorted_results.csv.gz anti-conservative anti-conservative 0.82 230 3566 979 NA NA NA NA NA NA
GSE119208 GSE119208_F613-TCS.txt.gz anti-conservative anti-conservative 0.92 254 4447 412 NA NA NA NA NA NA
GSE119273 GSE119273_LR73_AC_results.txt.gz anti-conservative other 0.91 160 2767 297 NA NA NA NA NA NA
GSE119333 GSE119333_BSGX001-vs-BSGX001_thi2.DESeq.diff.txt.gz anti-conservative anti-conservative 0.85 164 2661 536 anti-conservative 0.88 75 1251 200
GSE121173 GSE121173_gene_exp.diff.txt.gz anti-conservative anti-conservative 0.97 108 1977 73 NA NA NA NA NA NA
GSE121725 GSE121725_OVVSGSF_circRNA_differential_expression.xlsx anti-conservative anti-conservative 0.62 249 2912 2955 NA NA NA NA NA NA
GSE121725 GSE121725_Transcript_differential_expression.xlsx anti-conservative other 0.62 210 2483 2416 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-0 anti-conservative other 0.88 191 3205 481 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-1 anti-conservative other 0.87 147 2432 412 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-2 anti-conservative anti-conservative 0.86 320 5198 1019 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-3 anti-conservative anti-conservative 0.80 192 2895 935 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-4 anti-conservative anti-conservative 0.86 186 3029 579 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-5 anti-conservative anti-conservative 0.84 300 4806 1066 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-6 anti-conservative other 0.82 247 3836 1046 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-7 anti-conservative anti-conservative 0.81 256 3967 1110 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-8 anti-conservative other 0.85 244 3918 837 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-9 anti-conservative anti-conservative 0.79 226 3398 1126 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-10 anti-conservative anti-conservative 0.79 238 3588 1185 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-11 anti-conservative anti-conservative 0.81 230 3538 1017 NA NA NA NA NA NA
GSE121911 GSE121911_SFTS_Ferret_DEG.xlsx-sheet-Sheet1-set-12 anti-conservative other 0.86 236 3862 714 NA NA NA NA NA NA
GSE122095 GSE122095_N-VS-W.DEGseq_Method.GeneDiffExp.txt.gz anti-conservative anti-conservative 0.88 3476 58033 9124 NA NA NA NA NA NA
GSE122483 GSE122483_ren_gene.description.txt.gz anti-conservative anti-conservative 0.84 43 676 158 NA NA NA NA NA NA
GSE123459 GSE123459_WTCvsWTV.xlsx anti-conservative anti-conservative 0.82 316 4938 1296 anti-conservative 0.85 48 781 157
GSE123554 GSE123554_payelg_WT_Fis_gene_exp_Final.xlsx-sheet-Sheet1 anti-conservative other 0.87 57 938 158 NA NA NA NA NA NA
GSE17970 GSE17970_supplemental_table_1.xls.gz anti-conservative other 0.96 390 7135 291 NA NA NA NA NA NA
GSE32038 GSE32038_cds.diff.gz anti-conservative anti-conservative 0.95 528 9578 485 NA NA NA NA NA NA
GSE32038 GSE32038_promoters.diff.gz anti-conservative anti-conservative 0.95 683 12342 669 NA NA NA NA NA NA
GSE32038 GSE32038_splicing.diff.gz anti-conservative anti-conservative 0.96 824 14978 708 NA NA NA NA NA NA
GSE33736 GSE33736_HAmCqG0_G8expression.txt.gz anti-conservative other 0.84 339 5415 1209 NA NA NA NA NA NA
GSE36959 GSE36959_gene_exp_diff.txt.gz anti-conservative other 0.78 177 2630 936 NA NA NA NA NA NA
GSE37682 GSE37682_RAW.txt.gz anti-conservative anti-conservative 0.79 76 1142 390 NA NA NA NA NA NA
GSE39812 GSE39812_FB_result_transcript_summary.tsv.txt.gz anti-conservative other 0.89 1184 19930 2900 NA NA NA NA NA NA
GSE40478 GSE40478_output_score.txt.gz anti-conservative anti-conservative 0.90 441 7506 965 NA NA NA NA NA NA
GSE40948 GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz anti-conservative other 0.86 4124 67036 13226 NA NA NA NA NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative anti-conservative 0.70 1921 25699 15337 NA NA NA NA NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative anti-conservative 0.75 685 9745 4381 NA NA NA NA NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative anti-conservative 0.73 1452 20220 10043 NA NA NA NA NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative anti-conservative 0.58 412 4561 5599 NA NA NA NA NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative anti-conservative 0.60 1530 17465 19329 NA NA NA NA NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative anti-conservative 0.79 546 8219 2733 NA NA NA NA NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative anti-conservative 0.79 608 9078 3142 NA NA NA NA NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative anti-conservative 0.73 513 7107 3612 NA NA NA NA NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative anti-conservative 0.72 677 9227 5078 NA NA NA NA NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative anti-conservative 0.76 556 8045 3323 NA NA NA NA NA NA
GSE41873 GSE41873_FPKM_all_genes_from_CuffDiff.txt.gz anti-conservative other 0.80 59 899 278 NA NA NA NA NA NA
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-0 anti-conservative anti-conservative 0.80 211 3218 985 NA NA NA NA NA NA
GSE43189 GSE43189_processed_h99_rim101.csv.gz anti-conservative anti-conservative 0.84 218 3472 800 NA NA NA NA NA NA
GSE44402 GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz anti-conservative anti-conservative 0.95 53 955 54 NA NA NA NA NA NA
GSE45788 GSE45788_S72_2_RefII_S72_1_Emf_exp.cuff.gz anti-conservative other 0.82 16 253 68 NA NA NA NA NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-0 anti-conservative anti-conservative 0.90 529 9072 1078 NA NA NA NA NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-1 anti-conservative anti-conservative 0.92 624 10909 1027 NA NA NA NA NA NA
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz anti-conservative anti-conservative 0.95 449 8119 424 NA NA NA NA NA NA
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz anti-conservative anti-conservative 0.95 439 7954 413 NA NA NA NA NA NA
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz anti-conservative anti-conservative 0.95 388 7019 360 NA NA NA NA NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative anti-conservative 0.87 513 8478 1464 anti-conservative 0.91 105 1801 208
GSE50198 GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative anti-conservative 0.86 1371 22536 4070 NA NA NA NA NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative anti-conservative 0.81 313 4816 1386 anti-conservative 0.86 81 1321 251
GSE50198 GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative anti-conservative 0.90 1311 22475 2706 NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-0 anti-conservative other 0.99 460 8686 51 NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-1 anti-conservative other 0.97 434 7967 290 NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_2.txt.gz anti-conservative other 0.82 573 8880 2472 NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-0 anti-conservative other 0.88 562 9412 1447 NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-1 anti-conservative anti-conservative 0.87 997 16488 2831 NA NA NA NA NA NA
GSE50708 GSE50708_DE_result.txt.gz anti-conservative anti-conservative 0.87 411 6756 1207 NA NA NA NA NA NA
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative anti-conservative 0.83 60 951 240 NA NA NA NA NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative other 0.96 521 9504 420 NA NA NA NA NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative other 0.94 471 8400 577 NA NA NA NA NA NA
GSE52153 GSE52153_czt-1DMSOvsczt-1STS.txt.gz anti-conservative other 0.92 213 3726 339 NA NA NA NA NA NA
GSE52153 GSE52153_wtDMSOvswtSTS.txt.gz anti-conservative other 0.95 139 2512 135 NA NA NA NA NA NA
GSE53040 GSE53040_wtDMSOvswtXP13.txt.gz anti-conservative other 0.86 135 2208 407 NA NA NA NA NA NA
GSE54440 GSE54440_WT_Z2_RNAseq_rep2.txt.gz anti-conservative anti-conservative 0.76 194 2790 1178 NA NA NA NA NA NA
GSE54846 GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz anti-conservative other 0.98 124 2310 49 NA NA NA NA NA NA
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative anti-conservative 0.86 112 1825 346 NA NA NA NA NA NA
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative anti-conservative 0.83 37 584 141 NA NA NA NA NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative other 0.95 278 5010 296 NA NA NA NA NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative other 0.94 358 6353 470 NA NA NA NA NA NA
GSE56169 GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz anti-conservative other 0.95 270 4859 296 NA NA NA NA NA NA
GSE56346 GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz anti-conservative anti-conservative 0.89 302 5088 733 anti-conservative 0.89 78 1319 192
GSE57217 GSE57217_bck1wt_geneexp_diff.txt.gz anti-conservative anti-conservative 0.77 82 1191 467 NA NA NA NA NA NA
GSE57217 GSE57217_mkk2wt_geneexp_diff.txt.gz anti-conservative other 0.90 69 1183 144 NA NA NA NA NA NA
GSE57217 GSE57217_mpk1wt_geneexp_diff.txt.gz anti-conservative anti-conservative 0.80 72 1095 331 NA NA NA NA NA NA
GSE57397 GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz anti-conservative anti-conservative 0.92 561 9851 869 NA NA NA NA NA NA
GSE57397 GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz anti-conservative anti-conservative 0.91 544 9374 1066 NA NA NA NA NA NA
GSE57397 GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz anti-conservative anti-conservative 0.91 600 10310 1195 NA NA NA NA NA NA
GSE57397 GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz anti-conservative anti-conservative 0.90 563 9681 1127 NA NA NA NA NA NA
GSE57482 GSE57482_output_score.txt.gz anti-conservative anti-conservative 0.91 522 9027 967 NA NA NA NA NA NA
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative anti-conservative 0.78 39 569 213 NA NA NA NA NA NA
GSE58053 GSE58053_25mm-over-0mm.txt.gz anti-conservative anti-conservative 0.67 47 606 434 NA NA NA NA NA NA
GSE58053 GSE58053_25mm-over-1mm.txt.gz anti-conservative anti-conservative 0.60 30 348 376 NA NA NA NA NA NA
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-0 anti-conservative other 0.95 229 4121 250 NA NA NA NA NA NA
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-1 anti-conservative other 0.92 313 5485 494 NA NA NA NA NA NA
GSE59571 GSE59571_S13113_genesdiff.xlsx anti-conservative other 0.90 381 6505 808 NA NA NA NA NA NA
GSE59715 GSE59715_finalHiCRNAseqTable.csv.gz anti-conservative anti-conservative 0.80 221 3365 1051 anti-conservative 0.62 43 506 512
GSE59814 GSE59814_processed_data.txt.gz anti-conservative anti-conservative 0.83 88 1380 351 NA NA NA NA NA NA
GSE59980 GSE59980_RNA-seq_598-SKD.txt.gz-set-1 anti-conservative other 0.78 797 11887 4149 NA NA NA NA NA NA
GSE60191 GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1 anti-conservative anti-conservative 0.37 123 863 4018 NA NA NA NA NA NA
GSE60968 GSE60968_VEC_vs_CRE_DE.txt.gz anti-conservative anti-conservative 0.86 370 6019 1174 NA NA NA NA NA NA
GSE61915 GSE61915_FilteredDifferentialExpression_min_10reads_3M-24M.xls.gz anti-conservative anti-conservative 0.75 230 3277 1446 anti-conservative 0.78 50 744 277
GSE61915 GSE61915_FilteredDifferentialExpression_min_10reads_3M-29M.xls.gz anti-conservative anti-conservative 0.82 137 2123 580 anti-conservative 0.72 28 378 207
GSE63510 GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz anti-conservative other 0.97 445 8181 280 NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz anti-conservative other 0.74 101 1415 688 NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz anti-conservative anti-conservative 0.58 159 1747 2197 NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz anti-conservative anti-conservative 0.59 112 1261 1478 NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz anti-conservative anti-conservative 0.48 59 544 1217 NA NA NA NA NA NA
GSE63707 GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz anti-conservative other 0.77 129 1890 725 NA NA NA NA NA NA
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz anti-conservative anti-conservative 0.81 205 3153 926 NA NA NA NA NA NA
GSE65487 GSE65487_deseq.rminus_rplus.ensembl.csv.gz anti-conservative other 0.98 446 8345 141 NA NA NA NA NA NA
GSE65487 GSE65487_deseq.rplus_gplus.ensembl.csv.gz anti-conservative other 0.94 659 11749 825 NA NA NA NA NA NA
GSE65973 GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz anti-conservative anti-conservative 0.83 244 3840 962 anti-conservative 0.86 66 1074 205
GSE66793 GSE66793_cmp1-3-geo-gene.tsv.gz anti-conservative anti-conservative 0.78 69 1021 371 NA NA NA NA NA NA
GSE66822 GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz anti-conservative anti-conservative 0.98 137 2554 55 anti-conservative 0.88 20 342 53
GSE67756 GSE67756_LA2A-vs-LC2A.compare.txt.gz anti-conservative anti-conservative 0.82 1383 21576 5729 NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LA2A.compare.txt.gz anti-conservative anti-conservative 0.81 1339 20599 5993 NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LC2A.compare.txt.gz anti-conservative anti-conservative 0.79 1076 16058 5579 NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LF1A.compare.txt.gz anti-conservative anti-conservative 0.80 1206 18410 5618 NA NA NA NA NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz anti-conservative anti-conservative 0.89 863 14658 1950 anti-conservative 0.92 88 1527 153
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz anti-conservative anti-conservative 0.89 847 14329 1987 anti-conservative 0.93 91 1606 140
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz anti-conservative anti-conservative 0.89 863 14658 1950 anti-conservative 0.92 88 1527 153
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz anti-conservative other 0.97 560 10294 367 NA NA NA NA NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz anti-conservative anti-conservative 0.89 847 14329 1987 anti-conservative 0.93 91 1606 140
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz anti-conservative other 0.97 560 10294 367 NA NA NA NA NA NA
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative other 0.93 503 8889 728 NA NA NA NA NA NA
GSE68998 GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz anti-conservative anti-conservative 0.85 250 4039 825 anti-conservative 0.80 31 473 151
GSE69001 GSE69001_DE_list_planktonic_v_biolfim.txt.gz anti-conservative anti-conservative 0.86 93 1510 289 NA NA NA NA NA NA
GSE69001 GSE69001_DE_list_planktonic_v_plate.txt.gz anti-conservative anti-conservative 0.88 112 1882 286 NA NA NA NA NA NA
GSE69001 GSE69001_DE_list_plate_v_biofilm.txt.gz anti-conservative anti-conservative 0.87 103 1700 299 NA NA NA NA NA NA
GSE69110 GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz anti-conservative other 0.87 272 4527 739 NA NA NA NA NA NA
GSE69876 GSE69876_results.csv.gz anti-conservative anti-conservative 0.88 512 8564 1319 anti-conservative 0.91 101 1729 200
GSE70093 GSE70093_Supplementary_file_1.xls.gz-sheet-Sharbati Grain anti-conservative anti-conservative 0.62 310 3649 3616 NA NA NA NA NA NA
GSE70093 GSE70093_Supplementary_file_1.xls.gz-sheet-Lalat Grain anti-conservative anti-conservative 0.64 314 3818 3343 NA NA NA NA NA NA
GSE70093 GSE70093_Supplementary_file_1.xls.gz-sheet-Sharbati Root anti-conservative anti-conservative 0.48 158 1461 3198 NA NA NA NA NA NA
GSE70093 GSE70093_Supplementary_file_1.xls.gz-sheet-Lalat Root anti-conservative anti-conservative 0.56 458 4872 6818 NA NA NA NA NA NA
GSE70141 GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz anti-conservative other 0.89 187 3156 437 NA NA NA NA NA NA
GSE70141 GSE70141_Ax2_0H_1_2_Ax2_10H_1_2_DESeq.results.genenames.txt.gz anti-conservative anti-conservative 0.94 476 8523 557 anti-conservative 0.94 75 1329 93
GSE70141 GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz anti-conservative anti-conservative 0.92 423 7426 656 anti-conservative 0.91 81 1406 147
GSE70488 GSE70488_Day_vs_Night_sSeq.txt.gz anti-conservative anti-conservative 0.48 400 3632 8299 NA NA NA NA NA NA
GSE71185 GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative anti-conservative 0.83 200 3163 760 NA NA NA NA NA NA
GSE71185 GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative anti-conservative 0.78 149 2200 810 NA NA NA NA NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz anti-conservative other 0.85 44 707 142 NA NA NA NA NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative anti-conservative 0.85 78 1260 266 NA NA NA NA NA NA
GSE71539 GSE71539_TP0vsTP23_gene_results.txt.gz anti-conservative other 0.81 67 1036 292 NA NA NA NA NA NA
GSE71539 GSE71539_TP0vsTP23_tag_results.txt.gz anti-conservative anti-conservative 0.82 205 3177 873 NA NA NA NA NA NA
GSE71710 GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz anti-conservative anti-conservative 0.77 85 1244 469 anti-conservative 0.58 16 175 220
GSE71862 GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz anti-conservative anti-conservative 0.83 396 6219 1583 anti-conservative 0.81 54 830 234
GSE71902 GSE71902_WILD-vs-CPH2.txt.gz anti-conservative anti-conservative 0.65 36 451 369 NA NA NA NA NA NA
GSE72491 GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz anti-conservative anti-conservative 0.78 177 2629 925 anti-conservative 0.76 25 369 149
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative anti-conservative 0.83 182 2865 702 NA NA NA NA NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative anti-conservative 0.78 155 2292 829 NA NA NA NA NA NA
GSE74103 GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative anti-conservative 0.80 718 10868 3480 anti-conservative 0.84 31 488 112
GSE74103 GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative anti-conservative 0.78 1061 15742 5653 anti-conservative 0.86 49 794 151
GSE74103 GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative anti-conservative 0.84 1406 22506 4992 anti-conservative 0.90 54 919 110
GSE74168 GSE74168_expressed_transcripts_RNAseq_GLIrnai_posterior_midgut_EC.txt.gz anti-conservative other 0.91 504 8739 924 NA NA NA NA NA NA
GSE74171 GSE74171_expressed_transcript_aging_RNAseq_posterior_midgut.txt.gz anti-conservative other 0.94 429 7676 506 NA NA NA NA NA NA
GSE74554 GSE74554_Diff_All_genes_A30_C30.csv.gz anti-conservative anti-conservative 0.84 47 752 169 anti-conservative 0.85 28 444 93
GSE74929 GSE74929_Diff_Exp.txt.gz anti-conservative other 0.97 40 727 27 NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz anti-conservative anti-conservative 0.94 84 1499 99 NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz anti-conservative anti-conservative 0.95 137 2473 133 NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz anti-conservative anti-conservative 0.95 282 5084 278 NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.up.G166.list.txt.gz anti-conservative anti-conservative 0.94 48 860 55 NA NA NA NA NA NA
GSE75731 GSE75731_ckvsd119a_gene_exp_diff.txt.gz anti-conservative anti-conservative 0.87 62 1024 169 NA NA NA NA NA NA
GSE75731 GSE75731_ckvsdrug_gene_exp_diff.txt.gz anti-conservative anti-conservative 0.91 46 785 88 NA NA NA NA NA NA
GSE75731 GSE75731_ckvsv149a_gene_exp_diff.txt.gz anti-conservative anti-conservative 0.95 36 659 36 NA NA NA NA NA NA
GSE75962 GSE75962_control_vs_H2O2.DEseq.txt.gz anti-conservative other 0.81 161 2460 740 NA NA NA NA NA NA
GSE77025 GSE77025_gene_exp.diff.gz anti-conservative anti-conservative 0.81 1198 18522 5197 NA NA NA NA NA NA
GSE77044 GSE77044_comparison2.xls.gz anti-conservative anti-conservative 0.71 71 955 554 anti-conservative 0.75 14 202 89
GSE77077 GSE77077_HT_data_36hpf.xls.gz anti-conservative anti-conservative 0.85 288 4656 968 NA NA NA NA NA NA
GSE77398 GSE77398_mal_all6_cuffdiff_genes.xls.gz anti-conservative other 0.96 69 1256 56 NA NA NA NA NA NA
GSE78967 GSE78967_Deseq_Analysis.xlsx anti-conservative other 0.90 232 3957 509 NA NA NA NA NA NA
GSE79039 GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative anti-conservative 0.85 197 3163 681 anti-conservative 0.82 76 1194 312
GSE79039 GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative anti-conservative 0.89 149 2517 356 anti-conservative 0.81 62 955 279
GSE79143 GSE79143_SNPCountsTable.txt.gz anti-conservative anti-conservative 0.84 545 8684 2000 NA NA NA NA NA NA
GSE79435 GSE79435_DESeq2_genes_diffexp_by_fc_mLN-GF_vs_mLN-SPF.csv.gz anti-conservative anti-conservative 0.78 125 1840 684 anti-conservative 0.75 30 432 186
GSE79435 GSE79435_DESeq2_genes_diffexp_by_fc_pLN-GF_vs_mLN-GF.csv.gz anti-conservative anti-conservative 0.90 173 2966 361 anti-conservative 0.82 32 493 136
GSE79435 GSE79435_DESeq2_genes_diffexp_by_fc_pLN-GF_vs_pLN-SPF.csv.gz anti-conservative anti-conservative 0.91 69 1189 127 anti-conservative 0.73 14 199 102
GSE79435 GSE79435_DESeq2_genes_diffexp_by_fc_pLN-SPF_vs_mLN-SPF.csv.gz anti-conservative anti-conservative 0.81 182 2781 830 anti-conservative 0.84 30 475 109
GSE79776 GSE79776_Veh_V_EGF_DESeq_Results.txt.gz anti-conservative other 0.94 514 9134 668 NA NA NA NA NA NA
GSE79916 GSE79916_Dataset_S1-JUM_output_for_differential_AS_analyses_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz anti-conservative anti-conservative 0.93 275 4844 405 NA NA NA NA NA NA
GSE80135 GSE80135_siNeg_siProx_sig_results.csv.gz anti-conservative other 0.87 137 2266 380 NA NA NA NA NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz anti-conservative anti-conservative 0.68 51 656 446 NA NA NA NA NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative anti-conservative 0.93 158 2799 228 NA NA NA NA NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 anti-conservative anti-conservative 0.68 55 714 486 NA NA NA NA NA NA
GSE80348 GSE80348_20160316_6h_wt_vs_mu.xlsx anti-conservative other 0.89 476 8041 1118 NA NA NA NA NA NA
GSE80349 GSE80349_results.txt.gz-set-0 anti-conservative anti-conservative 0.92 309 5422 481 NA NA NA NA NA NA
GSE81043 GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz anti-conservative anti-conservative 0.90 561 9634 1126 anti-conservative 0.92 89 1558 143
GSE81128 GSE81128_DESeq2_Results.txt.gz anti-conservative anti-conservative 0.89 507 8559 1217 anti-conservative 0.92 82 1435 130
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz anti-conservative anti-conservative 0.80 192 2934 897 anti-conservative 0.75 39 560 241
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz anti-conservative anti-conservative 0.82 251 3889 1072 anti-conservative 0.79 52 782 266
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz anti-conservative anti-conservative 0.79 128 1927 629 anti-conservative 0.73 28 387 202
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv anti-conservative anti-conservative 0.80 420 6423 1947 anti-conservative 0.81 42 654 183
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up anti-conservative anti-conservative 0.88 169 2836 435 NA NA NA NA NA NA
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down anti-conservative anti-conservative 0.76 251 3621 1513 anti-conservative 0.79 36 547 185
GSE82134 GSE82134_NCBI_res_root_deseq_full.xlsx anti-conservative other 1.00 388 7366 12 NA NA NA NA NA NA
GSE83218 GSE83218_HSC.txt.gz anti-conservative anti-conservative 0.76 47 671 281 anti-conservative 0.59 20 232 265
GSE83375 GSE83375_GB_glia.FPKM.txt.gz anti-conservative other 0.80 198 3018 927 NA NA NA NA NA NA
GSE83541 GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz anti-conservative anti-conservative 0.94 142 2540 165 anti-conservative 0.78 9 130 46
GSE83736 GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz anti-conservative other 0.91 481 8288 947 NA NA NA NA NA NA
GSE83736 GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz anti-conservative other 1.00 486 9214 22 NA NA NA NA NA NA
GSE84699 GSE84699_RNAseq_cpx_vs_dmso_DESeq2.txt.gz anti-conservative other 0.87 383 6315 1102 NA NA NA NA NA NA
GSE84737 GSE84737_All_genes_unfiltered_DE.txt.gz anti-conservative anti-conservative 0.79 321 4805 1632 NA NA NA NA NA NA
GSE84737 GSE84737_Genes_filtered_DE.txt.gz anti-conservative anti-conservative 0.80 226 3437 1082 NA NA NA NA NA NA
GSE85329 GSE85329_IGF_project_IGF_results.txt.gz anti-conservative other 0.93 199 3510 289 NA NA NA NA NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted anti-conservative other 0.97 505 9339 261 NA NA NA NA NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted anti-conservative other 0.95 560 10090 591 NA NA NA NA NA NA
GSE86203 GSE86203_Rps26_dependent_recognition-DESeq.xlsx.gz-sheet-DESeq anti-conservative anti-conservative 0.80 112 1695 539 anti-conservative 0.81 45 688 197
GSE86203 GSE86203_Rps3TAP_comparison-DESeq.xlsx.gz-sheet-R3vElu_DiffExp anti-conservative anti-conservative 0.84 150 2402 545 anti-conservative 0.85 56 898 185
GSE86203 GSE86203_Rps3TAP_comparison-DESeq.xlsx.gz-sheet-R3vFT_DiffExp anti-conservative anti-conservative 0.81 46 715 208 anti-conservative 0.74 13 184 88
GSE86301 GSE86301_shCdGAP_vs_shCtl_fpkm_counts.txt.gz anti-conservative other 0.91 278 4829 501 NA NA NA NA NA NA
GSE87089 GSE87089_Supplementary_data.xls.gz-sheet-differentially expressed genes-set-0 anti-conservative anti-conservative 0.50 191 1826 3557 NA NA NA NA NA NA
GSE87089 GSE87089_Supplementary_data.xls.gz-sheet-differentially expressed genes-set-1 anti-conservative anti-conservative 0.88 403 6724 1054 NA NA NA NA NA NA
GSE87089 GSE87089_Supplementary_data.xls.gz-sheet-differentially expressed genes-set-2 anti-conservative anti-conservative 0.54 185 1902 2987 NA NA NA NA NA NA
GSE87167 GSE87167_all_genes.txt.gz anti-conservative anti-conservative 0.91 1095 18841 2175 NA NA NA NA NA NA
GSE87398 GSE87398_gene_exp.diff.gz anti-conservative other 0.97 30 548 15 NA NA NA NA NA NA
GSE87398 GSE87398_genes_group_exp.diff.gz anti-conservative other 0.99 30 555 7 NA NA NA NA NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2 anti-conservative anti-conservative 0.83 145 2282 578 NA NA NA NA NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3 anti-conservative anti-conservative 0.74 133 1882 877 NA NA NA NA NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-1 anti-conservative anti-conservative 0.77 147 2146 833 NA NA NA NA NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3 anti-conservative anti-conservative 0.71 124 1674 947 NA NA NA NA NA NA
GSE87495 GSE87495_results_dds_gencode22.csv.gz anti-conservative anti-conservative 0.88 516 8650 1306 anti-conservative 0.91 75 1298 145
GSE87706 GSE87706_SM_vs_RODI.txt.gz anti-conservative anti-conservative 0.88 92 1553 229 anti-conservative 0.91 37 642 73
GSE89004 GSE89004_ppGpp0_vs_H78_differential_all.xls.gz anti-conservative anti-conservative 0.88 161 2698 399 anti-conservative 0.90 38 650 80
GSE89238 GSE89238_SET2_KO_DESeq2_output.txt.gz anti-conservative anti-conservative 0.95 54 979 58 anti-conservative 0.75 16 225 100
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_DESeq_significant-set-0 anti-conservative anti-conservative 0.86 370 6080 1099 anti-conservative 0.88 82 1382 204
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_DESeq_significant-set-1 anti-conservative anti-conservative 0.89 436 7380 1004 anti-conservative 0.89 91 1535 211
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_stau_deseq_ALL anti-conservative other 0.97 373 6847 241 NA NA NA NA NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_upf_deseq_ALL anti-conservative anti-conservative 0.96 436 7956 333 anti-conservative 0.88 80 1349 204
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_DESeq_significant-set-0 anti-conservative anti-conservative 0.85 373 6057 1206 anti-conservative 0.86 63 1018 200
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_DESeq_significant-set-1 anti-conservative anti-conservative 0.87 426 7025 1239 anti-conservative 0.86 63 1034 192
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_stau_deseq_ALL anti-conservative other 0.97 379 6979 220 NA NA NA NA NA NA
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_upf_deseq_ALL anti-conservative other 0.96 429 7834 335 NA NA NA NA NA NA
GSE89773 GSE89773_combined_expression_table.txt.gz-set-0 anti-conservative anti-conservative 0.86 176 2878 552 anti-conservative 0.91 64 1106 120
GSE89773 GSE89773_combined_expression_table.txt.gz-set-1 anti-conservative anti-conservative 0.85 148 2376 513 anti-conservative 0.87 57 938 164
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI anti-conservative anti-conservative 0.76 320 4628 1895 NA NA NA NA NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI anti-conservative anti-conservative 0.79 363 5469 1804 NA NA NA NA NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI anti-conservative other 0.67 171 2177 1608 NA NA NA NA NA NA
GSE90712 GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz anti-conservative anti-conservative 0.87 400 6594 1168 anti-conservative 0.84 67 1066 251
GSE90889 GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx anti-conservative other 0.85 174 2813 591 NA NA NA NA NA NA
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi anti-conservative anti-conservative 0.80 307 4656 1476 anti-conservative 0.83 60 954 236
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi anti-conservative anti-conservative 0.83 129 2029 510 anti-conservative 0.89 19 325 47
GSE91388 GSE91388_DESeq2_output.txt.gz anti-conservative anti-conservative 0.81 350 5375 1580 anti-conservative 0.81 50 761 228
GSE92720 GSE92720_Control_H32.xls.gz anti-conservative other 0.92 373 6492 659 NA NA NA NA NA NA
GSE93547 GSE93547_LMvsWTM_cleaned_deseq2.csv.gz anti-conservative anti-conservative 0.87 112 1848 326 anti-conservative 0.87 39 644 116
GSE93574 GSE93574_res_dds_LEKU_vs_LE.csv.gz anti-conservative anti-conservative 0.86 377 6148 1172 anti-conservative 0.83 64 999 254
GSE93574 GSE93574_res_dds_LEKU_vs_LPS.csv.gz anti-conservative anti-conservative 0.87 520 8555 1543 anti-conservative 0.89 91 1540 222
GSE93574 GSE93574_res_dds_LE_vs_LPS.csv.gz anti-conservative anti-conservative 0.88 560 9337 1495 anti-conservative 0.89 88 1488 214
GSE93614 GSE93614_Air_Eth_Results.txt.gz anti-conservative anti-conservative 0.82 47 740 197 anti-conservative 0.83 18 279 67
GSE93684 GSE93684_S1-1A-vs-R1-1A.compare.txt.gz anti-conservative anti-conservative 0.88 2795 46676 7312 NA NA NA NA NA NA
GSE93827 GSE93827_LMP1_2a_vs_GFP.txt.gz anti-conservative anti-conservative 0.87 371 6118 1080 anti-conservative 0.89 64 1081 155
GSE93877 GSE93877_NB4_RNASeq_ATRA.txt.gz anti-conservative anti-conservative 0.90 97 1659 194 anti-conservative 0.83 28 447 110
GSE94017 GSE94017_ATO_versus_control_diff.xlsx anti-conservative other 0.76 206 2983 1219 NA NA NA NA NA NA
GSE94818 GSE94818_Afu_RNAseq_processed_data.xls.gz-set-1 anti-conservative other 0.97 252 4659 141 NA NA NA NA NA NA
GSE94818 GSE94818_Afu_RNAseq_processed_data.xls.gz-set-5 anti-conservative other 1.00 224 4246 9 NA NA NA NA NA NA
GSE96555 GSE96555_DESeq.ctrl72hVstatsf172h-orig-FDR1.1.txt.gz anti-conservative other 0.98 334 6209 150 NA NA NA NA NA NA
GSE96960 GSE96960_DESeq2_genes_diffexp_by_fc_iTregs_plusVitC_vs_iTregs_negVitC.csv.gz anti-conservative anti-conservative 0.80 94 1421 449 NA NA NA NA NA NA
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz anti-conservative anti-conservative 0.91 237 4083 458 anti-conservative 0.89 56 937 137
GSE96999 GSE96999_DESeq2_nextseq_output.txt.gz anti-conservative anti-conservative 0.84 140 2249 500 anti-conservative 0.90 11 187 24
GSE97060 GSE97060_122KOMouse_SleuthOutput.txt.gz anti-conservative anti-conservative 0.82 253 3938 1067 NA NA NA NA NA NA
GSE97345 GSE97345_Cassette_AARap_diffexp.txt.gz anti-conservative anti-conservative 0.85 121 1955 404 anti-conservative 0.84 68 1091 252
GSE97345 GSE97345_Cassette_NrdRap_diffexp.txt.gz anti-conservative anti-conservative 0.82 112 1759 457 anti-conservative 0.84 64 1013 240
GSE97443 GSE97443_KnockDown1_vs_Control1.all.gene.result.txt.gz anti-conservative other 0.94 406 7244 504 NA NA NA NA NA NA
GSE98084 GSE98084_All_Data_BaCl2.xlsx anti-conservative anti-conservative 0.56 111 1179 1657 NA NA NA NA NA NA
GSE98091 GSE98091_siHOTAIR-vs-siNC.diff.txt.gz anti-conservative anti-conservative 0.99 344 6471 62 anti-conservative 0.87 71 1173 197
GSE98467 GSE98467_RNA-Seq_CB15N_vs_CJW5477_expression_data.txt.gz anti-conservative anti-conservative 0.86 100 1635 300 NA NA NA NA NA NA
GSE98526 GSE98526_A12_vs_UA159T5.txt.gz anti-conservative anti-conservative 0.82 36 560 145 NA NA NA NA NA NA
GSE98871 GSE98871_DESeq_Lambert_data.xlsx-sheet-siDDX5-17 vs siCTRL anti-conservative other 0.90 257 4415 515 NA NA NA NA NA NA
GSE98871 GSE98871_DESeq_Lambert_data.xlsx-sheet-siDDX5-17+siREST vs siCTRL anti-conservative anti-conservative 0.90 350 5999 732 anti-conservative 0.85 64 1041 217
GSE99096 GSE99096_Yang_Processed_data_Oxidative_Stress.xlsx anti-conservative anti-conservative 0.95 103 1862 99 NA NA NA NA NA NA
GSE99211 GSE99211_AnZwijsen_Solid-20180116-diffexpr-results-Group_KO.SetA_vs_Ctrl.csv.gz anti-conservative anti-conservative 0.76 159 2292 964 anti-conservative 0.73 23 315 164
GSE99211 GSE99211_AnZwijsen_Solid-20180116-diffexpr-results-Group_KO.SetB_vs_Ctrl.csv.gz anti-conservative anti-conservative 0.77 229 3367 1271 anti-conservative 0.72 38 516 283
GSE99211 GSE99211_AnZwijsen_Solid-20180116-diffexpr-results-KO.SetBvsKO.SetA.csv.gz anti-conservative anti-conservative 0.82 161 2519 653 anti-conservative 0.87 22 356 62
GSE99231 GSE99231_293_DESEQ2.txt.gz anti-conservative anti-conservative 0.82 275 4268 1184 NA NA NA NA NA NA
GSE99401 GSE99401_GEO_Bonetti_CommaDB_raw_reads.xlsx-set-0 anti-conservative other 0.90 466 7983 960 NA NA NA NA NA NA
GSE99401 GSE99401_GEO_Bonetti_CommaDB_raw_reads.xlsx-set-1 anti-conservative other 0.91 432 7485 784 NA NA NA NA NA NA
GSE99598 GSE99598_hp_rna.csv.gz anti-conservative other 0.96 152 2769 130 NA NA NA NA NA NA
GSE99944 GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz anti-conservative other 0.90 357 6078 780 NA NA NA NA NA NA
GSE100175 GSE100175_Supplementary_Table_1.xlsx-sheet-DRG_vs_trigeminal_LRT NA NA anti-conservative NA NA NA NA anti-conservative 0.41 9 66 239
GSE100175 GSE100175_Supplementary_Table_1.xlsx-sheet-male_vs_female_WALD NA NA anti-conservative NA NA NA NA anti-conservative 0.49 13 120 251
GSE100175 GSE100175_Supplementary_Table_1.xlsx-sheet-male_female+interactions_WALD NA NA other NA NA NA NA anti-conservative 0.48 10 93 207
GSE100367 GSE100367_CL6566_vs_CL6364_processed.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.59 4 46 54
GSE100367 GSE100367_CL6768_vs_CL6364_processed.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.65 8 101 86
GSE100578 GSE100578_jmjc_vs_WT.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.79 50 740 254
GSE100578 GSE100578_A512P_vs_WT.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.76 40 576 231
GSE100829 GSE100829_N2_HPL2_J2IP_DESeqResults.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.91 9 159 18
GSE101157 GSE101157_LargeRNA.shL1.100hrs.293T.xlsx.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.88 80 1343 209
GSE101167 GSE101167_LargeRNA.siL3-IDT_Dharmacon.48hrs.HeyA8.xlsx.gz-set-0 NA NA anti-conservative NA NA NA NA anti-conservative 0.94 85 1512 107
GSE101167 GSE101167_LargeRNA.siL3-IDT_Dharmacon.48hrs.HeyA8.xlsx.gz-set-1 NA NA anti-conservative NA NA NA NA anti-conservative 0.93 77 1370 107
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-0 NA NA anti-conservative NA NA NA NA anti-conservative 0.93 46 811 62
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-1 NA NA anti-conservative NA NA NA NA anti-conservative 0.80 47 713 231
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-2 NA NA anti-conservative NA NA NA NA anti-conservative 0.81 35 534 160
GSE101234 GSE101234_LargeRNA.shL3.50_100hrs.293T.shR6.50_100hrs.HeyA8.xlsx.gz-set-3 NA NA anti-conservative NA NA NA NA anti-conservative 0.77 36 520 205
GSE101898 GSE101898_Galaxy122-CellXtype_QKO_vs_QT7.tabular.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 61 944 268
GSE101898 GSE101898_Galaxy123-CellXtype_QKO_vs_QT7L1.tabular.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.84 61 969 227
GSE101898 GSE101898_Galaxy124-CellXtype_QT7_vs_QT7L1.tabular.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.72 10 139 76
GSE101898 GSE101898_Galaxy125-CellXtype_WT_vs_QKO.tabular.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.82 57 886 235
GSE101898 GSE101898_Galaxy126-CellXtype_WT_vs_QT7.tabular.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 21 329 94
GSE101898 GSE101898_Galaxy127-CellXtype_WT_vs_QT7L1.tabular.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.84 19 297 67
GSE102060 GSE102060_BPA_vs_Control.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.82 26 409 108
GSE102369 GSE102369_deseq_differential_expression_results.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.83 58 916 220
GSE102474 GSE102474_RNA_DESeq2.tsv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 58 890 251
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-0 NA NA anti-conservative NA NA NA NA anti-conservative 0.76 28 402 165
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-1 NA NA anti-conservative NA NA NA NA anti-conservative 0.72 25 341 183
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-2 NA NA anti-conservative NA NA NA NA anti-conservative 0.91 81 1405 154
GSE102531 GSE102531_DE2output-280116.xlsx.gz-set-3 NA NA anti-conservative NA NA NA NA anti-conservative 0.90 80 1369 164
GSE102772 GSE102772_comparison_RNA_expression.xlsx-sheet-SAP97 NA NA anti-conservative NA NA NA NA anti-conservative 0.64 9 112 97
GSE102872 GSE102872_DESeq_12h_vs_0h.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.94 20 365 24
GSE102872 GSE102872_DESeq_3h_vs_0h.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.99 30 560 8
GSE103531 GSE103531_summary_lad1.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.79 24 359 121
GSE103607 GSE103607_deseq.toptable.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.86 19 309 59
GSE104049 GSE104049_DESeq2.GMC3hvsNB3h.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.85 46 742 152
GSE104049 GSE104049_DESeq2.GMC5hvsNB5h.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.83 56 886 226
GSE104049 GSE104049_DESeq2.GMC90mvsNB90m.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.82 36 556 154
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs ATH (sortUP) NA NA anti-conservative NA NA NA NA anti-conservative 0.87 39 648 112
GSE104590 GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx-sheet- (ATH&VDA) vs ATH (sortDOWN) NA NA anti-conservative NA NA NA NA anti-conservative 0.87 39 648 112
GSE105064 GSE105064_Treat_vs_control_diff.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.75 40 566 258
GSE105068 GSE105068_deseq_WT_versus_KO_lung_all_genes.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.84 15 243 54
GSE105128 GSE105128_result.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.75 32 450 203
GSE108161 GSE108161_deseq2_results.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.83 27 432 103
GSE108392 GSE108392_Henna_RNA_results_annotated_shPPFIA1_vs_shScr.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.70 44 589 350
GSE108418 GSE108418_tagged_EZH2_T372A_overexpression_vs_overexpressing_cells.DESeq2_Results.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.85 25 405 82
GSE108418 GSE108418_tagged_EZH2_T372E_overexpression_vs_tagged_EZH2_T372A_overexpression.DESeq2_Results.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.70 22 297 182
GSE108418 GSE108418_tagged_EZH2_T372E_overexpression_vs_tagged_EZH2_overexpression.DESeq2_Results.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.57 20 211 280
GSE108418 GSE108418_tagged_EZH2_overexpression_vs_overexpressing_cells.DESeq2_Results.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.58 12 138 169
GSE108471 GSE108471_Germline_RNAseq.xlsx-sheet-diff_exp NA NA anti-conservative NA NA NA NA anti-conservative 0.73 55 760 381
GSE108732 GSE108732_DEseq2-NF.csv.gz NA NA other NA NA NA NA anti-conservative 0.71 9 123 71
GSE108749 GSE108749_DMSO-vs-129_results.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.71 32 427 250
GSE109111 GSE109111_WT_KD_DESeq_analysis_Result_Table.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 6 93 28
GSE109177 GSE109177_SafePR50_vs_TMX2PR50-ExpDiff_neurons_.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 56 846 273
GSE109461 GSE109461_expression_data.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.90 41 692 88
GSE109510 GSE109510_Differential_Normalized_Counts.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.85 18 295 61
GSE109540 GSE109540_RNAseq.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.78 31 465 166
GSE109844 GSE109844_CD4lowHLA-G_vs_human_N_CD4_diff.xls.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 32 487 156
GSE111082 GSE111082_Mouse_EV_N2NL_DESeq2.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.90 20 345 40
GSE111227 GSE111227_TruSeq.DESeq2_results.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.84 24 390 89
GSE111305 GSE111305_SGI_vs_Control.DESeq2_Results.xlsx-sheet-SGI_vs_Control.DESeq2_Results NA NA anti-conservative NA NA NA NA anti-conservative 0.75 17 238 107
GSE111379 GSE111379_3chemos.80hrs.HeyA8.xlsx-sheet-All chemo samples.csv-set-0 NA NA anti-conservative NA NA NA NA anti-conservative 0.90 71 1223 144
GSE111379 GSE111379_3chemos.80hrs.HeyA8.xlsx-sheet-All chemo samples.csv-set-1 NA NA anti-conservative NA NA NA NA anti-conservative 0.92 80 1392 141
GSE111379 GSE111379_3chemos.80hrs.HeyA8.xlsx-sheet-All chemo samples.csv-set-2 NA NA anti-conservative NA NA NA NA anti-conservative 0.90 72 1227 157
GSE112367 GSE112367_n2.adr2.ip.input.deseq.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.51 24 229 431
GSE113053 GSE113053_deseq.HSC.bfx338.xls.gz-sheet-all_genes NA NA anti-conservative NA NA NA NA anti-conservative 0.86 76 1244 228
GSE113053 GSE113053_deseq.MPP.bfx312.xls.gz-sheet-all_genes NA NA anti-conservative NA NA NA NA anti-conservative 0.81 55 850 253
GSE113404 GSE113404_DESeq2_results_Mat1_OE_wt.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.81 21 319 92
GSE113979 GSE113979_DESeq2.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 48 739 219
GSE114346 GSE114346_LEH_differential_expression_analysis_table.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.83 31 493 119
GSE114941 GSE114941_DEseq2.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.90 92 1567 201
GSE114998 GSE114998_Spreadsheet2_CT_mRNAseq.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.64 12 145 130
GSE115474 GSE115474_Untreated_Control_vs_Treatment.genesTABULATED.xls.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.71 13 173 100
GSE116776 GSE116776_KO_vs_WT.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 59 915 257
GSE116815 GSE116815_DESeq2_DP_ASL.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.85 48 784 160
GSE116815 GSE116815_DESeq2_DPlike_ASL.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.83 42 669 164
GSE116866 GSE116866_murine_3group_normalized_matrix.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 63 969 282
GSE116915 GSE116915_Microbead_vs_control_raw_data_RNAseq_mouse.define_DESeq2.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.78 43 632 230
GSE117610 GSE117610_PC9_parental_vs_DTC.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.43 16 128 396
GSE117632 GSE117632_Hypoxia_ALKBH1_Knockdown_RNAseq_Processed.xlsx.gz-sheet-DESeq2 Results NA NA anti-conservative NA NA NA NA anti-conservative 0.79 31 458 156
GSE118217 GSE118217_AN_vs_AW.xlsx.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.75 18 259 115
GSE118423 GSE118423_alc.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.94 12 220 14
GSE118656 GSE118656_schulman_kla_v_veh_interaction_results-genelist_2_.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.60 8 98 106
GSE118674 GSE118674_Zhu_processed_data.xlsx.gz-sheet-Deseq2_raw_output NA NA anti-conservative NA NA NA NA anti-conservative 0.83 24 375 93
GSE118915 GSE118915_Ovol2_MutantvsControl_Processed.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.99 21 392 5
GSE119046 GSE119046_rpoS819_vs_wtrpoS.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.93 49 859 70
GSE119046 GSE119046_rpoS92_vs_wtrpoS.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 13 201 64
GSE119273 GSE119273_LR73_AC_results.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.69 38 492 322
GSE122990 GSE122990_DEseq_ARC7-ARC10-ARC16_ARM4-ARM5-ARM6_DEG_list_1_.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.85 41 669 140
GSE123403 GSE123403_CDK0005_PAO1_results_all.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.78 22 327 119
GSE40218 GSE40218_processed_DESeq.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.96 9 161 8
GSE41766 GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.91 50 870 99
GSE44233 GSE44233_processed_data.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.64 18 221 198
GSE46066 GSE46066_ICRFVsDMSO.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.67 20 256 191
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 NA NA anti-conservative NA NA NA NA anti-conservative 0.85 76 1229 266
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 NA NA anti-conservative NA NA NA NA anti-conservative 0.80 37 566 179
GSE54846 GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 51 770 245
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.94 56 999 65
GSE58910 GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.84 16 252 58
GSE61031 GSE61031_DE_polyaWT_vs_polyaKO.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.90 19 323 41
GSE61033 GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 32 490 158
GSE61033 GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.99 20 384 5
GSE61336 GSE61336_results_167_vs_WTZ.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.85 28 446 91
GSE61336 GSE61336_results_167_vs_WTL.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 26 394 125
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.68 36 456 323
GSE63510 GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.87 65 1068 187
GSE63836 GSE63836_C15Dx_versus_Untr.DESeq.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.86 65 1066 194
GSE63836 GSE63836_Dx_versus_C15Dx.DESeq.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.89 20 342 48
GSE65487 GSE65487_deseq.rminus_rplus.ensembl.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.87 82 1341 239
GSE65487 GSE65487_deseq.rplus_gplus.ensembl.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.91 103 1767 202
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-0 NA NA anti-conservative NA NA NA NA anti-conservative 0.87 28 463 78
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-1 NA NA anti-conservative NA NA NA NA anti-conservative 0.87 29 484 84
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-2 NA NA anti-conservative NA NA NA NA anti-conservative 0.87 28 453 81
GSE67334 GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.77 46 672 256
GSE67646 GSE67646_DESeq_1.10.1.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.89 71 1204 171
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.90 77 1316 165
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.90 77 1316 165
GSE69110 GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.88 59 989 158
GSE70141 GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.77 30 435 170
GSE70860 GSE70860_DEaxons.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.94 11 202 14
GSE72390 GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.93 13 238 19
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.78 32 477 176
GSE74920 GSE74920_SupplementalTable1.xlsx.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.86 58 942 186
GSE74920 GSE74920_SupplementalTable3.xlsx.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 41 618 195
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S1 NA NA anti-conservative NA NA NA NA anti-conservative 0.86 58 942 186
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S3 NA NA anti-conservative NA NA NA NA anti-conservative 0.80 41 618 195
GSE75833 GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.92 40 707 64
GSE75962 GSE75962_control_vs_H2O2.DEseq.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.64 29 350 311
GSE76257 GSE76257_O-VG_OGS2.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.87 29 476 79
GSE76482 GSE76482_deseq.comparisons.xls.gz-sheet-14.5 wt VS 14.5 S1pr2 null NA NA anti-conservative NA NA NA NA anti-conservative 0.82 57 893 231
GSE76482 GSE76482_deseq.comparisons.xls.gz-sheet-14.5+2 CTRL VS 14.5+2+JTE+CTGF NA NA anti-conservative NA NA NA NA anti-conservative 0.90 86 1474 187
GSE76482 GSE76482_deseq.comparisons.xls.gz-sheet-14.5+2+JTE VS 14.5+2+JTE+CTGF NA NA anti-conservative NA NA NA NA anti-conservative 0.83 69 1095 265
GSE76991 GSE76991_Gcn5KD_H2O_DEseq.xls.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.61 7 83 88
GSE76994 GSE76994_TKD_H2O_DEseq.xls.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.89 30 500 71
GSE77901 GSE77901_SLNCR1_vs_vector.deseq.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.57 35 384 500
GSE77901 GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz NA NA other NA NA NA NA anti-conservative 0.60 9 104 115
GSE77901 GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.79 59 889 303
GSE77902 GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.68 27 346 234
GSE78240 GSE78240_DESeq_Output.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 39 597 187
GSE78967 GSE78967_Deseq_Analysis.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.81 57 872 250
GSE79577 GSE79577_DESeq2_FTO_KO.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.67 23 296 222
GSE79633 GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 23 345 110
GSE79776 GSE79776_Veh_V_EGF_DESeq_Results.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.87 75 1246 209
GSE79822 GSE79822_Deseq_totalRNA.txt.gz NA NA other NA NA NA NA anti-conservative 0.78 10 149 53
GSE80128 GSE80128_P035_DESeq_KO-WT_pathway.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.73 12 165 83
GSE80135 GSE80135_Lipo_siProx_SC_results.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.75 14 193 89
GSE80135 GSE80135_Lipo_siProx_sig_results.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.75 20 286 129
GSE80135 GSE80135_siNeg_Lipo_results.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.74 18 256 119
GSE80135 GSE80135_siNeg_siProx_SC_results.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.74 17 233 111
GSE80135 GSE80135_siNeg_siProx_sig_results.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.77 39 571 215
GSE80354 GSE80354_Gata6_DEseq2_res.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.96 7 132 6
GSE81059 GSE81059_cns-control_vs_head-control.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.92 76 1319 127
GSE81069 GSE81069_1vs2_DESeq_func_added.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.90 75 1273 166
GSE81069 GSE81069_1vs3_DESeq_func_added.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.90 74 1263 158
GSE81069 GSE81069_4vs5_DESeq_func_added.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.89 72 1216 165
GSE81593 GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.85 49 787 161
GSE81593 GSE81593_2.Mcf10A_Vec_and_Hras.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.75 25 360 165
GSE81865 GSE81865_RNAseq_uninjured-14dpi.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.86 27 437 82
GSE83736 GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.85 62 1002 208
GSE83736 GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.89 64 1079 155
GSE84492 GSE84492_Kdm5c_def_mouse_expression_values.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.71 36 485 279
GSE84699 GSE84699_RNAseq_cpx_vs_dmso_DESeq2.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.83 53 838 213
GSE84699 GSE84699_RNAseq_pcbp1kd_vs_control_DESeq2.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.91 65 1126 122
GSE85328 GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.76 34 489 208
GSE85329 GSE85329_IGF_project_IGF_results.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.78 40 600 217
GSE85565 GSE85565_Result_Table.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.83 32 501 125
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted NA NA anti-conservative NA NA NA NA anti-conservative 0.92 78 1368 127
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted NA NA anti-conservative NA NA NA NA anti-conservative 0.90 88 1521 177
GSE85847 GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.85 42 687 141
GSE86301 GSE86301_shCdGAP_vs_shCtl_fpkm_counts.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.87 41 681 123
GSE86521 GSE86521_DESeq_out_KO_vs_WT.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.88 30 503 75
GSE87808 GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.75 14 196 84
GSE89115 GSE89115_DEG.xls.gz-sheet-DEG_setC_setA NA NA anti-conservative NA NA NA NA anti-conservative 0.89 43 727 106
GSE89115 GSE89115_DEG.xls.gz-sheet-DEG_setC_setE NA NA anti-conservative NA NA NA NA anti-conservative 0.73 27 376 195
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-c2c12_stau_deseq_ALL NA NA anti-conservative NA NA NA NA anti-conservative 0.87 73 1208 205
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_stau_deseq_ALL NA NA anti-conservative NA NA NA NA anti-conservative 0.83 52 812 201
GSE89588 GSE89588_SupplementalTable_S4.xlsx.gz-sheet-hskmc_upf_deseq_ALL NA NA anti-conservative NA NA NA NA anti-conservative 0.85 48 763 165
GSE90889 GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.81 30 468 133
GSE92971 GSE92971_run1513_gencode_DESeq2_lateFGFvsControl_gene_diff_rawcnt.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.79 34 517 175
GSE93313 GSE93313_DESeq_2Dvs3D.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 66 1015 294
GSE93313 GSE93313_DESeq_2DvsTranswell.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.87 81 1345 224
GSE93313 GSE93313_DESeq_3DvsTranswell.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.81 52 796 238
GSE93748 GSE93748_shTAZ_in_DU145_proceeded_data.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.89 10 175 26
GSE93870 GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES NA NA anti-conservative NA NA NA NA anti-conservative 0.81 13 206 58
GSE93870 GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq NA NA anti-conservative NA NA NA NA anti-conservative 0.75 18 262 119
GSE93870 GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq NA NA anti-conservative NA NA NA NA anti-conservative 0.78 46 686 251
GSE94017 GSE94017_ATO_versus_control_diff.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.62 30 352 350
GSE94017 GSE94017_ATRA_versus_control_diff.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.62 16 183 184
GSE94280 GSE94280_DESeq2_results_Y_vs_O.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.89 60 1020 143
GSE94587 GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.91 14 239 27
GSE94587 GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.87 32 522 90
GSE94587 GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.95 18 321 17
GSE95337 GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.87 72 1191 212
GSE96549 GSE96549_DESeq.L3NbVsL3NbBarcIR-orig-FDR1.1.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.85 54 874 187
GSE96549 GSE96549_DESeq.dsBarcGDVsdsmCherry-orig-FDR1.1.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 38 577 187
GSE96555 GSE96555_DESeq.ctrl48hVstatsf148h-orig-FDR1.1.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.83 42 654 162
GSE96555 GSE96555_DESeq.ctrl72hVstatsf172h-orig-FDR1.1.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.86 70 1137 217
GSE96626 GSE96626_DE_TrtVsVeh.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.93 14 242 20
GSE96960 GSE96960_DESeq2_genes_diffexp_by_fc_iTregs_plusVitC_vs_iTregs_negVitC.csv.gz NA NA other NA NA NA NA anti-conservative 0.70 21 279 169
GSE97167 GSE97167_result_foldchange_deseq2.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.72 16 217 116
GSE97395 GSE97395_Treat_vs_control_diff.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.78 36 542 194
GSE97443 GSE97443_KnockDown1_vs_Control1.all.gene.result.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.89 87 1478 198
GSE97469 GSE97469_HEPG2_EV_versus_shRNA.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.84 30 476 110
GSE98082 GSE98082_E13_5_Tie2_Ino80_KO_DESeq2.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.69 24 313 205
GSE98258 GSE98258_annotated_diffana_exp++_p100++-p30++.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.76 15 219 89
GSE98258 GSE98258_annotated_diffana_exp+-_p100+–p30+-.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.70 26 349 216
GSE98258 GSE98258_annotated_diffana_exp30j_p30+–p30++.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.97 14 256 9
GSE98580 GSE98580_DESeq2_ERbeta_EV_HEK293.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.77 30 439 172
GSE98871 GSE98871_DESeq_Lambert_data.xlsx-sheet-siDDX5-17 vs siCTRL NA NA anti-conservative NA NA NA NA anti-conservative 0.78 44 654 234
GSE98888 GSE98888_DESeq2data.xlsx NA NA anti-conservative NA NA NA NA anti-conservative 0.78 23 344 121
GSE98989 GSE98989_DESeq2_infectedvsnon-infected.complete.txt.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 14 210 67
GSE99401 GSE99401_GEO_Bonetti_CommaDB_raw_reads.xlsx-set-0 NA NA anti-conservative NA NA NA NA anti-conservative 0.89 81 1372 195
GSE99401 GSE99401_GEO_Bonetti_CommaDB_raw_reads.xlsx-set-1 NA NA anti-conservative NA NA NA NA anti-conservative 0.88 77 1275 206
GSE99598 GSE99598_hp_rna.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.80 30 455 145
GSE99944 GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz NA NA anti-conservative NA NA NA NA anti-conservative 0.86 55 888 174

Discussion

We need to dicuss some things here.

Reproducibility of ChIP-Seq results is poor and highly dependent on the software tools used (Steinhauser et al. 2016).

References

Dowle, Matt, and Arun Srinivasan. 2019. Data.table: Extension of ‘Data.frame‘. https://CRAN.R-project.org/package=data.table.

Steinhauser, S., N. Kurzawa, R. Eils, and C. Herrmann. 2016. “A comprehensive comparison of tools for differential ChIP-seq analysis.” Brief. Bioinformatics 17 (6): 953–66.

Temple Lang, Duncan, and the CRAN Team. 2019. XML: Tools for Parsing and Generating Xml Within R and S-Plus. https://CRAN.R-project.org/package=XML.

Wickham, Hadley, and Jennifer Bryan. 2018. Readxl: Read Excel Files. https://CRAN.R-project.org/package=readxl.

Wickham, Hadley, James Hester, and Jeroen Ooms. 2018. Xml2: Parse Xml. https://CRAN.R-project.org/package=xml2.